work/3599846507_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599846507_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846507_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599846507_sv1	28356246	51667	0.001822	23148828	0.183643	11543367	0.742135	0.255633	0.867217	0.132783	235	335	487	11215344	0.971583	9726136	1489208	17179558	5917603	365.386975	120.06926	5207418	0.976393	0.938733	0.938733	4245686850	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	171669	0.217011	0.0	0.187368	0.22923	0.283107	0.378246	0.868547	1.214859	1.02374	0.9103	1.004327	0.990197	0.95467	1.084326	1.01833	0.890281	0.590955	0.299629	0.335584	0.0	0.0	0.0	246.312673	0.325612	1538.0	65.0	94.0	248.0	406.0	469.0	0.061798	0.998976	6345824	5973029	1.00	0.938202	6366463	0.0054	682	-1216.0318	66.3047	6388832

2 rows