work/3599846508_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599846508_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846508_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599846508_sv1	30916916	64670	0.002092	25243212	0.183515	12583620	0.749878	0.24756	0.866312	0.133688	216	318	471	12243417	0.972965	10606624	1636793	18929335	6249207	349.107298	121.247208	5673704	0.976313	0.939187	0.939187	4627836900	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	188892	0.171953	0.0	0.142783	0.205966	0.268452	0.377588	0.860394	1.199158	1.019837	0.91257	1.008697	0.999211	0.959121	1.093836	1.025962	0.907926	0.602434	0.298286	0.302965	0.0	0.0	0.0	266.079074	0.316144	1189.0	74.0	106.0	268.0	436.0	495.0	0.038388	0.999137	6345983	6122065	1.00	0.961612	6366463	0.0031	683	-1070.0334	25.6731	6388832

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