work/3599846511_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599846511_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846511_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599846511_sv1	36400868	60809	0.001671	28679005	0.212134	14303765	0.74387	0.25401	0.867316	0.132684	230	330	480	13866710	0.969445	12026824	1839886	21333450	7284746	360.173074	119.262398	7721863	0.976553	0.938914	0.938914	5451008850	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	213652	0.1712	0.0	0.173781	0.228708	0.280429	0.384641	0.874469	1.208548	1.024347	0.907921	1.002058	0.992565	0.956745	1.086647	1.022707	0.900298	0.610893	0.303195	0.349283	0.0	0.0	0.0	303.41468	0.317809	1793.0	84.0	119.0	307.0	495.0	558.0	0.022488	0.999046	6346668	6223295	1.00	0.977512	6366463	0.0073	617	-1593.0031	118.8811	6388832

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