work/3599846513_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599846513_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846513_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599846513_sv1	37010904	59343	0.001603	29226406	0.21033	14578403	0.751166	0.246804	0.86806	0.13194	214	319	475	14174796	0.972315	12304580	1870216	21953881	7213182	350.124501	123.271461	7784498	0.976965	0.940342	0.940342	5542734150	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	219220	0.188602	0.0	0.176283	0.218401	0.272007	0.376285	0.873556	1.205298	1.023377	0.908328	1.002996	0.993076	0.956316	1.095257	1.021828	0.906656	0.605323	0.290184	0.438371	0.0	0.0	0.0	307.915529	0.314608	1752.0	86.0	123.0	311.0	503.0	571.0	0.019407	0.998087	6344739	6242909	1.00	0.980593	6366463	0.0047	571	-1336.0447	48.3966	6388832

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