work/3599846515_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599846515_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846515_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599846515_sv1	35505044	56068	0.001579	28855504	0.187284	14394694	0.75287	0.245187	0.865067	0.134933	208	313	470	14042037	0.975501	12147304	1894733	21724449	7074987	344.423083	123.925865	6649540	0.976817	0.940366	0.940366	5317346400	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	216465	0.176304	0.0	0.147593	0.194904	0.256731	0.36168	0.854633	1.184712	1.02221	0.910815	1.009005	0.99815	0.963046	1.114277	1.041156	0.927092	0.620151	0.297877	0.394777	0.0	0.0	0.0	301.825435	0.311929	1442.0	85.0	123.0	304.0	494.0	560.0	0.020254	0.999034	6344989	6237515	1.00	0.979746	6366463	0.0111	641	-2068.545	211.0692	6388832

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