work/3599846516_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599846516_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846516_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599846516_sv1	36234606	58024	0.001601	29297942	0.191438	14614993	0.746309	0.25171	0.866931	0.133069	230	330	480	14245565	0.974723	12349916	1895649	21865323	7374595	360.034419	118.985855	6936664	0.97764	0.94132	0.94132	5426487300	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	218131	0.181221	0.0	0.176406	0.220751	0.272499	0.381928	0.877851	1.217718	1.02869	0.908561	0.997129	0.981036	0.945059	1.092375	1.028808	0.921875	0.625592	0.313916	0.388705	0.0	0.0	0.0	312.343562	0.317845	1243.0	85.0	122.0	316.0	510.0	576.0	0.020086	0.999114	6345905	6238588	1.00	0.979914	6366463	0.0099	651	-2109.5977	189.3763	6388832

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