work/3599846517_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599846517_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846517_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599846517_sv1	42554726	72114	0.001695	33325212	0.216886	16621100	0.743494	0.254342	0.866409	0.133591	224	328	482	16087537	0.967898	13938379	2149158	24777098	8476000	358.583107	122.077942	9229514	0.976203	0.938256	0.938256	6372391800	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	246225	0.155249	0.0	0.167476	0.220261	0.287317	0.378435	0.882431	1.208142	1.02459	0.90638	1.000514	0.9935	0.958062	1.086927	1.019145	0.889112	0.606173	0.28943	0.336434	0.0	0.0	0.0	351.955807	0.315635	1882.0	98.0	139.0	357.0	571.0	650.0	0.010753	0.996347	6346935	6298006	1.00	0.989247	6366463	0.0021	634	-1103.9938	16.929	6388832

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