work/3599846519_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599846519_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846519_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599846519_sv1	31833872	48071	0.00151	25234496	0.207307	12588361	0.741352	0.256743	0.867439	0.132561	234	334	485	12186072	0.968043	10570675	1615397	18707639	6478786	364.358195	119.261009	6599376	0.976882	0.93985	0.93985	4767870150	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	186896	0.163402	0.0	0.147461	0.206476	0.267828	0.37603	0.87435	1.209532	1.025635	0.911442	1.002222	0.996612	0.955063	1.081733	1.010575	0.880187	0.601531	0.290509	0.362674	0.0	0.0	0.0	268.438688	0.321667	1299.0	72.0	103.0	271.0	440.0	497.0	0.042826	0.999161	6345329	6093810	1.00	0.957174	6366463	0.0086	577	-1483.4634	134.5865	6388832

2 rows