work/3599846522_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599846522_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846522_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599846522_sv1	28225184	49514	0.001754	22781084	0.192881	11360619	0.734859	0.262967	0.863966	0.136034	216	333	503	10924097	0.961576	9438043	1486054	16740892	5990678	364.787969	133.863663	5444100	0.974241	0.933356	0.933356	4226350500	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	168594	0.179985	0.0	0.182193	0.223558	0.288642	0.361502	0.830208	1.160232	1.00791	0.913819	1.018902	1.03142	0.992066	1.115178	1.026843	0.863071	0.593862	0.278732	0.287093	0.0	0.0	0.0	233.359748	0.319486	1023.0	62.0	91.0	234.0	387.0	442.0	0.068303	0.999677	6343929	5931614	1.00	0.931697	6366463	0.008	553	-1262.2233	94.9552	6388832

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