work/3599846526_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599846526_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846526_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599846526_sv1	32059202	55019	0.001716	26043757	0.187636	12989166	0.752188	0.2457	0.867072	0.132928	216	316	467	12633850	0.972645	10954453	1679397	19589797	6398941	346.756063	119.245079	6015445	0.976704	0.939621	0.939621	4800627450	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	192302	0.163595	0.0	0.17682	0.220638	0.270716	0.377606	0.87309	1.211635	1.028649	0.909361	1.000901	0.988907	0.949151	1.087523	1.022502	0.915184	0.611079	0.283947	0.405559	0.0	0.0	0.0	275.321316	0.31333	1318.0	77.0	111.0	278.0	448.0	506.0	0.03168	0.999448	6346930	6164773	1.00	0.96832	6366463	0.0067	688	-1512.6792	104.3781	6388832

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