work/3599846528_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599846528_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846528_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599846528_sv1	38655734	68466	0.001771	31519168	0.184619	15719818	0.751363	0.246465	0.86582	0.13418	210	313	468	15253891	0.970361	13207124	2046767	23682338	7768364	344.039931	122.020836	7136566	0.97609	0.937751	0.937751	5788090200	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	235959	0.187932	0.0	0.164594	0.213663	0.273332	0.358967	0.838305	1.183908	1.017388	0.911741	1.011987	1.007495	0.968032	1.110774	1.047776	0.922921	0.616291	0.292104	0.415988	0.0	0.0	0.0	331.011862	0.311044	1575.0	94.0	134.0	334.0	542.0	611.0	0.012969	0.99905	6346997	6283898	1.00	0.987031	6366463	0.0143	689	-2983.1944	409.2157	6388832

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