work/3599846529_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3599846529_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3599846529_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3599846529_sv1	37002486	62100	0.001678	29327010	0.207431	14627109	0.742222	0.255661	0.867646	0.132354	234	335	487	14200805	0.970855	12321266	1879539	21767150	7497760	365.398835	120.691498	7675476	0.976297	0.938424	0.938424	5541057900	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	219434	0.196474	0.0	0.159581	0.212379	0.26919	0.376159	0.877019	1.208968	1.023326	0.906461	1.004637	0.993006	0.953453	1.091169	1.024333	0.899558	0.599167	0.299552	0.308867	0.0	0.0	0.0	311.927231	0.32084	1446.0	85.0	121.0	316.0	511.0	579.0	0.021232	0.998731	6346157	6231288	1.00	0.978768	6366463	0.0145	664	-2653.3858	365.1672	6388832

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