cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Sig_18_tissue.md.bam --read_filter QualCalFilter,table=Sig_18_tissue.table,indel=false --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz Sig_18_tissue.table.post --algo ReadWriter Sig_18_tissue.recalibrated.bam
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:162000001, elapsed 0.1s, est remaining 2.2s, peak mem 410MB, user 0.3s, sys 2.8s, output queue size 6
progress 10% @chr2:66000001, elapsed 0.2s, est remaining 1.9s, peak mem 799MB, user 0.5s, sys 5.4s, output queue size 41
progress 15% @chr2:235000001, elapsed 0.3s, est remaining 1.7s, peak mem 1045MB, user 0.8s, sys 8.0s, output queue size 24
progress 20% @chr3:154000001, elapsed 0.4s, est remaining 1.6s, peak mem 1213MB, user 0.9s, sys 10.6s, output queue size 7
progress 25% @chr4:117000001, elapsed 0.5s, est remaining 1.4s, peak mem 1378MB, user 1.2s, sys 13.1s, output queue size 3
progress 30% @chr5:87000001, elapsed 0.6s, est remaining 1.3s, peak mem 1507MB, user 1.3s, sys 15.6s, output queue size 12
progress 35% @chr6:67000001, elapsed 0.7s, est remaining 1.2s, peak mem 1633MB, user 1.6s, sys 18.1s, output queue size 7
progress 40% @chr7:56000001, elapsed 0.7s, est remaining 1.1s, peak mem 1730MB, user 1.8s, sys 20.5s, output queue size 8
progress 45% @chr8:60000001, elapsed 0.8s, est remaining 1.0s, peak mem 1895MB, user 2.0s, sys 23.1s, output queue size 16
progress 50% @chr9:73000001, elapsed 0.9s, est remaining 0.9s, peak mem 2020MB, user 2.2s, sys 25.6s, output queue size 6
progress 55% @chr10:94000001, elapsed 1.0s, est remaining 0.8s, peak mem 2102MB, user 2.5s, sys 28.1s, output queue size 1
progress 60% @chr11:124000001, elapsed 1.1s, est remaining 0.7s, peak mem 2201MB, user 2.8s, sys 30.6s, output queue size 8
progress 65% @chr13:22000001, elapsed 1.2s, est remaining 0.6s, peak mem 2284MB, user 3.0s, sys 33.2s, output queue size 15
progress 70% @chr14:61000001, elapsed 1.3s, est remaining 0.5s, peak mem 2312MB, user 3.2s, sys 35.7s, output queue size 22
progress 75% @chr16:11000001, elapsed 1.4s, est remaining 0.5s, peak mem 2351MB, user 3.4s, sys 38.4s, output queue size 19
progress 80% @chr17:82000001, elapsed 1.5s, est remaining 0.4s, peak mem 2365MB, user 3.7s, sys 40.9s, output queue size 2
progress 85% @chr20:22000001, elapsed 1.6s, est remaining 0.3s, peak mem 2422MB, user 3.9s, sys 43.5s, output queue size 10
progress 90% @chrX:45000001, elapsed 1.9s, est remaining 0.2s, peak mem 2797MB, user 7.9s, sys 44.4s, output queue size 114
progress 95% @chrY:46000001, elapsed 2.1s, est remaining 0.1s, peak mem 2812MB, user 9.2s, sys 44.8s, output queue size 276
progress 100% @chr21:41000001, elapsed 5.8s, est remaining 0.0s, peak mem 2833MB, user 28.0s, sys 45.5s, output queue size 3664
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal ReadWriter
license: sentieon:QualCal=31 sentieon:ReadWriter=31
input file size: 50046964
output file size: 93159884
reads: 1001838
contig: 3367 intervals 3217346917 bases
ReadQualCal::clearEPSVecOne: 8 calls 0.000 user 0.004 sys 0.025 real
ReadQualCal::delayed_init: 1 calls 0.007 user 0.001 sys 0.025 real
ReadQualCal::init: 1 calls 0.000 user 0.000 sys 0.006 real
advance: 3219322 calls 1.454 user 5.224 sys 7.224 real
done: 1 calls 0.356 user 0.283 sys 0.641 real
exec_no_coor: 1 calls 0.000 user 0.000 sys 0.000 real
execute: 1 calls 0.000 user 0.008 sys 5.892 real
fetch: 3219323 calls 0.203 user 5.644 sys 5.709 real
fetch_reads: 3219322 calls 0.383 user 5.406 sys 5.775 real
fetch_ref: 13004 calls 0.039 user 0.036 sys 0.048 real
fetch_vcf: 13004 calls 1.561 user 0.104 sys 1.588 real
idle: 2306 calls 2.030 user 0.339 sys 152.545 real
init: 1 calls 0.007 user 0.001 sys 0.031 real
update: 13229 calls 7.483 user 0.996 sys 9.094 real
write: 3219323 calls 12.593 user 5.293 sys 18.222 real
overall: 2970689536 mem 34.726 user 46.424 sys 7.877 real
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 --algo QualCal --plot --before Sig_18_tissue.table --after Sig_18_tissue.table.post Sig_18_tissue.csv
This software is licensed to bgold@natera.com by Sentieon Inc.
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
ReadQualCal::init: 2 calls 0.030 user 0.000 sys 0.027 real
done: 1 calls 0.050 user 0.010 sys 0.057 real
idle: 61 calls 0.002 user 0.000 sys 31.154 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 83632128 mem 0.079 user 0.022 sys 1.046 real