Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/42/27cf1d74523f71584ad73c138845b8/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/42/27cf1d74523f71584ad73c138845b8/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/57/2de0ab5e9ebec4b9f490a2c498cdfc/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/42/27cf1d74523f71584ad73c138845b8/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/a021d9fc4ddaa954374efc8146f51e/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/a021d9fc4ddaa954374efc8146f51e/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-ajdk9qgr because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-05-26 20:45:09,000 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-05-26 20:45:09,833 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-05-26 20:45:10,008 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-05-26 20:45:10,941 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-05-26 20:45:11,108 - cnv_pipe.batch.run_model - INFO - Processing cluster 984 with 145 probes
2026-05-26 20:45:11,501 - cnv_pipe.batch.run_model.cluster984 - INFO - Child process started for cluster 984 with 145 probes
2026-05-26 20:45:56,928 - cnv_pipe.batch.run_model.cluster984 - INFO - Child process finished cluster 984. Wrote cluster_984_samples.csv and cluster_984_params.csv
2026-05-26 20:45:56,930 - cnv_pipe.batch.run_model - INFO - Cluster 984 finished in 45.82 seconds. Status: SUCCESS