cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Sig_18_Blood.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz Sig_18_Blood.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:119893964, elapsed 0.0s, est remaining 0.8s, peak mem 164MB, user 0.0s, sys 0.0s, output queue size 840
progress 10% @chr2:19989165, elapsed 0.1s, est remaining 0.7s, peak mem 164MB, user 0.0s, sys 0.0s, output queue size 4346
progress 15% @chr2:189053424, elapsed 0.1s, est remaining 0.6s, peak mem 164MB, user 0.0s, sys 0.0s, output queue size 3231
progress 20% @chr3:97941148, elapsed 0.1s, est remaining 0.6s, peak mem 164MB, user 0.0s, sys 0.0s, output queue size 13718
progress 25% @chr4:88007734, elapsed 0.2s, est remaining 0.5s, peak mem 164MB, user 0.0s, sys 0.0s, output queue size 23965
progress 30% @chr5:147361517, elapsed 0.2s, est remaining 0.5s, peak mem 166MB, user 0.0s, sys 0.0s, output queue size 2662
progress 35% @chr6:127446408, elapsed 0.3s, est remaining 0.5s, peak mem 166MB, user 0.0s, sys 0.0s, output queue size 12618
progress 40% @chr7:128769063, elapsed 0.3s, est remaining 0.4s, peak mem 166MB, user 0.0s, sys 0.0s, output queue size 22095
progress 45% @chr9:977002, elapsed 0.3s, est remaining 0.4s, peak mem 283MB, user 0.0s, sys 0.0s, output queue size 31458
progress 50% @chr10:32543300, elapsed 0.4s, est remaining 0.4s, peak mem 292MB, user 0.0s, sys 0.0s, output queue size 41405
progress 55% @chr11:48245104, elapsed 0.4s, est remaining 0.3s, peak mem 301MB, user 0.0s, sys 0.0s, output queue size 51872
progress 60% @chr12:21915668, elapsed 0.4s, est remaining 0.3s, peak mem 301MB, user 0.0s, sys 0.0s, output queue size 61418
progress 65% @chr13:49220338, elapsed 0.5s, est remaining 0.2s, peak mem 301MB, user 0.0s, sys 0.0s, output queue size 72469
progress 70% @chr15:42684116, elapsed 0.5s, est remaining 0.2s, peak mem 301MB, user 0.0s, sys 0.0s, output queue size 82522
progress 75% @chr16:30769186, elapsed 0.5s, est remaining 0.2s, peak mem 301MB, user 0.0s, sys 0.0s, output queue size 92071
progress 80% @chr17:42543028, elapsed 0.6s, est remaining 0.1s, peak mem 301MB, user 0.0s, sys 0.0s, output queue size 102758
progress 85% @chr19:5641740, elapsed 0.6s, est remaining 0.1s, peak mem 334MB, user 0.0s, sys 0.0s, output queue size 3824
progress 90% @chr19:55688870, elapsed 0.6s, est remaining 0.1s, peak mem 334MB, user 0.0s, sys 0.0s, output queue size 13326
progress 95% @chr22:37069073, elapsed 1.0s, est remaining 0.1s, peak mem 2533MB, user 6.2s, sys 1.7s, output queue size 3248
progress 100% @chr21:41501693, elapsed 1.0s, est remaining 0.0s, peak mem 2533MB, user 6.5s, sys 1.7s, output queue size 12805
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
input file size: 52291166
reads: 1001133
contig: 201779 intervals 37922265 bases
advance: 208647 calls 1.791 user 0.055 sys 2.122 real
done: 1 calls 0.239 user 0.090 sys 0.328 real
execute: 1 calls 0.001 user 0.010 sys 1.014 real
fetch_reads: 208647 calls 0.051 user 0.000 sys 0.145 real
fetch_ref: 2072 calls 0.030 user 0.005 sys 0.019 real
fetch_vcf: 2072 calls 0.791 user 0.022 sys 0.963 real
idle: 92 calls 0.016 user 0.001 sys 31.628 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 2257 calls 4.550 user 1.631 sys 6.704 real
overall: 2656223232 mem 10.410 user 12.019 sys 2.383 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory