Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/42/27cf1d74523f71584ad73c138845b8/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/42/27cf1d74523f71584ad73c138845b8/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/57/2de0ab5e9ebec4b9f490a2c498cdfc/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/42/27cf1d74523f71584ad73c138845b8/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/00/a8c6cbd51ddc02b6bd082ba26c847d/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/00/a8c6cbd51ddc02b6bd082ba26c847d/.command.sh
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-8uj4r1cy because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-05-26 20:45:57,818 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-05-26 20:45:58,829 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-05-26 20:45:59,027 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-05-26 20:46:00,367 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-05-26 20:46:00,591 - cnv_pipe.batch.run_model - INFO - Processing cluster 981 with 172 probes
2026-05-26 20:46:01,072 - cnv_pipe.batch.run_model.cluster981 - INFO - Child process started for cluster 981 with 172 probes
2026-05-26 20:47:08,941 - cnv_pipe.batch.run_model.cluster981 - INFO - Child process finished cluster 981. Wrote cluster_981_samples.csv and cluster_981_params.csv
2026-05-26 20:47:08,942 - cnv_pipe.batch.run_model - INFO - Cluster 981 finished in 68.35 seconds. Status: SUCCESS