cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Sig_18_tissue.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz Sig_18_tissue.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:119911554, elapsed 0.0s, est remaining 0.6s, peak mem 172MB, user 0.0s, sys 0.0s, output queue size 7666
progress 10% @chr2:19994299, elapsed 0.1s, est remaining 0.6s, peak mem 172MB, user 0.0s, sys 0.0s, output queue size 6731
progress 15% @chr2:189008035, elapsed 0.1s, est remaining 0.5s, peak mem 181MB, user 0.0s, sys 0.0s, output queue size 17130
progress 20% @chr3:97871842, elapsed 0.1s, est remaining 0.5s, peak mem 190MB, user 0.0s, sys 0.0s, output queue size 27612
progress 25% @chr4:88404876, elapsed 0.1s, est remaining 0.4s, peak mem 190MB, user 0.0s, sys 0.0s, output queue size 37862
progress 30% @chr5:146339548, elapsed 0.2s, est remaining 0.4s, peak mem 213MB, user 0.0s, sys 0.0s, output queue size 887
progress 35% @chr6:126340274, elapsed 0.2s, est remaining 0.4s, peak mem 213MB, user 0.0s, sys 0.0s, output queue size 10838
progress 40% @chr7:128810139, elapsed 0.2s, est remaining 0.3s, peak mem 222MB, user 0.0s, sys 0.0s, output queue size 20324
progress 45% @chr9:967985, elapsed 0.3s, est remaining 0.3s, peak mem 343MB, user 0.0s, sys 0.0s, output queue size 29694
progress 50% @chr10:32473967, elapsed 0.3s, est remaining 0.3s, peak mem 423MB, user 0.0s, sys 0.1s, output queue size 39629
progress 55% @chr11:48263861, elapsed 0.3s, est remaining 0.3s, peak mem 450MB, user 0.0s, sys 0.1s, output queue size 50101
progress 60% @chr12:22478313, elapsed 0.3s, est remaining 0.2s, peak mem 453MB, user 0.0s, sys 0.1s, output queue size 59677
progress 65% @chr13:49220338, elapsed 0.4s, est remaining 0.2s, peak mem 478MB, user 0.0s, sys 0.1s, output queue size 70697
progress 70% @chr15:42684116, elapsed 0.4s, est remaining 0.2s, peak mem 504MB, user 0.0s, sys 0.1s, output queue size 80730
progress 75% @chr16:30892586, elapsed 0.4s, est remaining 0.1s, peak mem 504MB, user 0.0s, sys 0.1s, output queue size 90294
progress 80% @chr17:42562612, elapsed 0.5s, est remaining 0.1s, peak mem 513MB, user 0.0s, sys 0.1s, output queue size 100991
progress 85% @chr19:5623206, elapsed 0.5s, est remaining 0.1s, peak mem 513MB, user 0.0s, sys 0.1s, output queue size 111394
progress 90% @chr19:55688870, elapsed 0.6s, est remaining 0.1s, peak mem 513MB, user 0.0s, sys 0.1s, output queue size 120893
progress 95% @chr22:37059313, elapsed 1.0s, est remaining 0.1s, peak mem 2523MB, user 8.5s, sys 1.3s, output queue size 3247
progress 100% @chr6_GL000254v2_alt:3876745, elapsed 1.0s, est remaining 0.0s, peak mem 2523MB, user 8.8s, sys 1.4s, output queue size 443
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
input file size: 50046964
reads: 1001838
contig: 201779 intervals 37922265 bases
advance: 208647 calls 1.733 user 0.059 sys 2.238 real
done: 1 calls 0.323 user 0.011 sys 0.336 real
execute: 1 calls 0.000 user 0.009 sys 1.021 real
fetch_reads: 208647 calls 0.107 user 0.001 sys 0.170 real
fetch_ref: 2079 calls 0.002 user 0.001 sys 0.019 real
fetch_vcf: 2079 calls 0.848 user 0.028 sys 1.028 real
idle: 92 calls 0.001 user 0.003 sys 31.546 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 2294 calls 7.470 user 1.240 sys 8.963 real
overall: 2645995520 mem 12.314 user 17.032 sys 2.386 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory