File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/86e4e1acf0f0903f6e2b67a551a3ce/.command.log
Size
4.3 KB
Attempt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/68c9199b298578fcd42a9a9909816c/positive_somatic_control_3.snv_indel.whatshap.chr11.phased.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3a/8f4790973a8736dc1bea0160f93394/positive_somatic_control_3.snv_indel.whatshap.chr16.phased.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/319040d803dc6ca8dc4b9920fb040a/positive_somatic_control_3.snv_indel.whatshap.chr7.phased.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/be/b76d2b4551bb9b1efdb7cc96833710/positive_somatic_control_3.snv_indel.whatshap.chr18.phased.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5a/ec93c3821a87dcd64a69980e0d8815/positive_somatic_control_3.snv_indel.whatshap.chr21.phased.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/86e4e1acf0f0903f6e2b67a551a3ce/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/11/3ca85bdd3f265f3b7e103f03218ea3/positive_somatic_control_3.snv_indel.whatshap.chr8.phased.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/473880cccb6dd624ded8049105a99e/positive_somatic_control_3.snv_indel.whatshap.chr2.phased.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/7d36f8e6431fd66fd745b33c50fe50/positive_somatic_control_3.snv_indel.whatshap.chr13.phased.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d6/15c965de586bc50b9e0b81adcc3eeb/positive_somatic_control_3.snv_indel.whatshap.chr4.phased.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b0/c5ad238fae0d75235451c5dcb669a3/positive_somatic_control_3.snv_indel.whatshap.chr15.phased.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/e96b8e2ada2a9973e7aec390576134/positive_somatic_control_3.snv_indel.whatshap.chrX.phased.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/96/5e9f1440ac8b1b84198dde0c92e90d/positive_somatic_control_3.snv_indel.whatshap.chr6.phased.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/79/0bfc364aa09aee25d480cac9858779/positive_somatic_control_3.snv_indel.whatshap.chr12.phased.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/94/f85c25830207276305c3c479cb49d0/positive_somatic_control_3.snv_indel.whatshap.chr17.phased.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a1/a5f4dbbed53ab714851319e1f090d5/positive_somatic_control_3.snv_indel.whatshap.chr1.phased.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2b/fe0314ef1b20c8114a769b794aac3e/positive_somatic_control_3.snv_indel.whatshap.chr6_GL000251v2_alt.phased.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/95/62697b203b15fac2538d518a5edeaa/positive_somatic_control_3.snv_indel.whatshap.chr9.phased.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/10/43299f4630b38298e069f0664ad396/positive_somatic_control_3.snv_indel.whatshap.chr10.phased.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fa/b99dae961d347e0d580bd606a3f4dc/positive_somatic_control_3.snv_indel.whatshap.chr19.phased.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/f87026972a8bffe3c6d7ebab32dd2f/positive_somatic_control_3.snv_indel.whatshap.chr14.phased.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7f/deb14b61dfc2c7a51ff8fc6bac9ce8/positive_somatic_control_3.snv_indel.whatshap.chr3.phased.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/b5d772dacf870410af086d17ff5516/positive_somatic_control_3.snv_indel.whatshap.chr22.phased.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4c/7b884065fe92eb59615a6541576f24/positive_somatic_control_3.snv_indel.whatshap.chr20.phased.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/86e4e1acf0f0903f6e2b67a551a3ce/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/35/12d1fce19e0e280120960de2ebe1e2/positive_somatic_control_3.snv_indel.whatshap.chr5.phased.vcf.gz
==> STAGING COMPLETE (26 inputs)

Checking the headers and starting positions of 24 files
ls: positive_somatic_control_3.snv_indel.phased.vcf.gz.csi: No such file or directory