Detecting adapter sequence for read1...
>Illumina TruSeq Adapter Read 1
AGATCGGAAGAGCACACGTCTGAACTCCAGTCA
Detecting adapter sequence for read2...
>Illumina TruSeq Adapter Read 2
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT
Read1 before filtering:
total reads: 28668401
total bases: 4328928551
Q20 bases: 4237192068(97.8809%)
Q30 bases: 4061424590(93.8206%)
Q40 bases: 4061424590(93.8206%)
Read2 before filtering:
total reads: 28668401
total bases: 4328928551
Q20 bases: 4172779083(96.3929%)
Q30 bases: 3908971563(90.2988%)
Q40 bases: 3908971563(90.2988%)
Read1 after filtering:
total reads: 28255116
total bases: 4145357642
Q20 bases: 4073544114(98.2676%)
Q30 bases: 3915769125(94.4616%)
Q40 bases: 3915769125(94.4616%)
Read2 after filtering:
total reads: 28255116
total bases: 4145618196
Q20 bases: 4027989294(97.1626%)
Q30 bases: 3796214840(91.5717%)
Q40 bases: 3796214840(91.5717%)
Filtering result:
reads passed filter: 56510232
reads failed due to low quality: 822042
reads failed due to too many N: 3906
reads failed due to too short: 622
reads with adapter trimmed: 6572003
bases trimmed due to adapters: 242939216
Duplication rate: 11.4555%
Insert size peak (evaluated by paired-end reads): 230
JSON report: 1136_5JK-N1-BDNA-1_B23KGCJLT4_1.fastp.json
HTML report: 1136_5JK-N1-BDNA-1_B23KGCJLT4_1.fastp.html
fastp --in1 1136_5JK-N1-BDNA-1_B23KGCJLT4_1_S76_L006_R1_001.fastq.gz --in2 1136_5JK-N1-BDNA-1_B23KGCJLT4_1_S76_L006_R2_001.fastq.gz --out1 1136_5JK-N1-BDNA-1_B23KGCJLT4_1/1136_5JK-N1-BDNA-1_B23KGCJLT4_1_R1.fastq.gz --out2 1136_5JK-N1-BDNA-1_B23KGCJLT4_1/1136_5JK-N1-BDNA-1_B23KGCJLT4_1_R2.fastq.gz --detect_adapter_for_pe --length_required 15 --json 1136_5JK-N1-BDNA-1_B23KGCJLT4_1.fastp.json --html 1136_5JK-N1-BDNA-1_B23KGCJLT4_1.fastp.html --thread 4
fastp v1.0.1, time used: 162 seconds