cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1029_11H-N1-BDNA-1_B23KGCJLT4_1.md.bam --read_filter QualCalFilter,table=1029_11H-N1-BDNA-1_B23KGCJLT4_1.table,indel=false --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz 1029_11H-N1-BDNA-1_B23KGCJLT4_1.table.post --algo ReadWriter 1029_11H-N1-BDNA-1_B23KGCJLT4_1.recalibrated.bam
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:187000001, elapsed 14.4s, est remaining 273.8s, peak mem 3907MB, user 345.6s, sys 5.4s, output queue size 145
progress 10% @chr2:46000001, elapsed 25.3s, est remaining 227.8s, peak mem 4763MB, user 712.6s, sys 7.5s, output queue size 48
progress 15% @chr3:4000001, elapsed 37.9s, est remaining 214.7s, peak mem 4835MB, user 1071.1s, sys 9.4s, output queue size 122
progress 20% @chr3:176000001, elapsed 48.6s, est remaining 194.2s, peak mem 4954MB, user 1412.6s, sys 10.7s, output queue size 141
progress 25% @chr4:134000001, elapsed 58.2s, est remaining 174.7s, peak mem 4958MB, user 1704.2s, sys 11.8s, output queue size 302
progress 30% @chr5:104000001, elapsed 65.8s, est remaining 153.6s, peak mem 4987MB, user 1946.1s, sys 13.0s, output queue size 464
progress 35% @chr6:79000001, elapsed 76.5s, est remaining 142.0s, peak mem 5000MB, user 2209.0s, sys 14.1s, output queue size 625
progress 40% @chr7:56000001, elapsed 88.3s, est remaining 132.5s, peak mem 5108MB, user 2583.9s, sys 15.6s, output queue size 195
progress 45% @chr8:78000001, elapsed 100.9s, est remaining 123.3s, peak mem 5141MB, user 2961.9s, sys 17.0s, output queue size 204
progress 50% @chr9:39000001, elapsed 111.3s, est remaining 111.3s, peak mem 5245MB, user 3271.0s, sys 18.2s, output queue size 366
progress 55% @chr10:93000001, elapsed 124.2s, est remaining 101.7s, peak mem 5297MB, user 3658.2s, sys 19.7s, output queue size 348
progress 60% @chr11:117000001, elapsed 137.8s, est remaining 91.9s, peak mem 5297MB, user 4060.0s, sys 21.2s, output queue size 510
progress 65% @chr13:18000001, elapsed 150.5s, est remaining 81.0s, peak mem 5297MB, user 4459.8s, sys 22.4s, output queue size 672
progress 70% @chr14:50000001, elapsed 158.8s, est remaining 68.0s, peak mem 5297MB, user 4679.5s, sys 23.4s, output queue size 833
progress 75% @chr16:38000001, elapsed 172.5s, est remaining 57.5s, peak mem 5297MB, user 5118.2s, sys 24.9s, output queue size 461
progress 80% @chr17:74000001, elapsed 192.9s, est remaining 48.2s, peak mem 5360MB, user 5706.3s, sys 27.2s, output queue size 190
progress 85% @chr19:57000001, elapsed 210.5s, est remaining 37.1s, peak mem 5360MB, user 6292.0s, sys 29.2s, output queue size 351
progress 90% @chrX:32000001, elapsed 222.6s, est remaining 24.7s, peak mem 5410MB, user 6650.7s, sys 30.4s, output queue size 513
progress 95% @chrY:52000001, elapsed 231.5s, est remaining 12.2s, peak mem 5449MB, user 6932.0s, sys 31.5s, output queue size 240
progress 100% @chrX:67000001, elapsed 246.5s, est remaining 0.0s, peak mem 5449MB, user 7208.4s, sys 32.9s, output queue size 3540
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal ReadWriter
license: sentieon:QualCal=31 sentieon:ReadWriter=31
input file size: 20529683564
output file size: 34857672854
reads: 437628298
contig: 3367 intervals 3217346917 bases
ReadQualCal::clearEPSVecOne: 8 calls 0.000 user 0.000 sys 0.023 real
ReadQualCal::delayed_init: 1 calls 0.009 user 0.000 sys 0.022 real
ReadQualCal::init: 1 calls 0.009 user 0.001 sys 0.006 real
advance: 3219322 calls 485.892 user 7.989 sys 505.054 real
done: 1 calls 0.533 user 0.307 sys 0.849 real
exec_no_coor: 1 calls 0.005 user 0.000 sys 0.011 real
execute: 1 calls 0.006 user 0.001 sys 246.753 real
fetch: 3219323 calls 20.178 user 0.485 sys 30.040 real
fetch_reads: 3219322 calls 92.298 user 0.552 sys 94.892 real
fetch_ref: 1640206 calls 5.251 user 1.074 sys 6.531 real
fetch_vcf: 1640206 calls 104.352 user 1.547 sys 108.209 real
idle: 17931 calls 8.243 user 0.215 sys 360.566 real
init: 1 calls 0.009 user 0.000 sys 0.028 real
update: 1773322 calls 1604.108 user 3.085 sys 1643.352 real
write: 3219323 calls 5352.523 user 14.752 sys 5406.967 real
overall: 5714079744 mem 7227.590 user 43.178 sys 248.968 real
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 --algo QualCal --plot --before 1029_11H-N1-BDNA-1_B23KGCJLT4_1.table --after 1029_11H-N1-BDNA-1_B23KGCJLT4_1.table.post 1029_11H-N1-BDNA-1_B23KGCJLT4_1.csv
This software is licensed to bgold@natera.com by Sentieon Inc.
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
ReadQualCal::init: 2 calls 0.040 user 0.010 sys 0.043 real
done: 1 calls 0.051 user 0.029 sys 0.080 real
idle: 61 calls 0.002 user 0.000 sys 31.310 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 86802432 mem 0.070 user 0.058 sys 1.052 real