Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2a/2c9c8d5c6d517aefdcd381d4ee0dc6/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/15/d8116785bef440aa08af2539d0d3f0/1029_0I-N1-BDNA-1_B23KGCJLT4_1.md.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/altera_v3_targets_postQC_hg38.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/15/d8116785bef440aa08af2539d0d3f0/1029_0I-N1-BDNA-1_B23KGCJLT4_1.md.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2a/2c9c8d5c6d517aefdcd381d4ee0dc6/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/foresight/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed
==> STAGING COMPLETE (8 inputs)

cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1029_0I-N1-BDNA-1_B23KGCJLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/altera_v3_targets_postQC_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1029_0I-N1-BDNA-1_B23KGCJLT4_1_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:151000001, elapsed 1.4s, est remaining 27.5s, peak mem 996MB, user 30.4s, sys 0.8s, output queue size 150
progress 10% @chr2:42000001, elapsed 2.6s, est remaining 23.4s, peak mem 1316MB, user 69.2s, sys 1.6s, output queue size 117
progress 15% @chr2:232000001, elapsed 3.7s, est remaining 21.2s, peak mem 1780MB, user 103.2s, sys 2.4s, output queue size 210
progress 20% @chr3:149000001, elapsed 4.5s, est remaining 18.1s, peak mem 1780MB, user 128.2s, sys 3.0s, output queue size 283
progress 25% @chr4:98000001, elapsed 5.3s, est remaining 15.8s, peak mem 1780MB, user 153.4s, sys 3.2s, output queue size 302
progress 30% @chr5:79000001, elapsed 5.9s, est remaining 13.7s, peak mem 1795MB, user 168.9s, sys 3.4s, output queue size 464
progress 35% @chr6:82000001, elapsed 6.7s, est remaining 12.4s, peak mem 1831MB, user 193.0s, sys 3.6s, output queue size 625
progress 40% @chr7:64000001, elapsed 7.6s, est remaining 11.4s, peak mem 1894MB, user 218.7s, sys 3.9s, output queue size 786
progress 45% @chr8:82000001, elapsed 8.7s, est remaining 10.6s, peak mem 1912MB, user 250.2s, sys 4.2s, output queue size 948
progress 50% @chr9:102000001, elapsed 9.5s, est remaining 9.5s, peak mem 1967MB, user 271.1s, sys 4.4s, output queue size 1110
progress 55% @chr10:104000001, elapsed 10.6s, est remaining 8.7s, peak mem 2004MB, user 303.5s, sys 4.7s, output queue size 1271
progress 60% @chr12:3000001, elapsed 11.7s, est remaining 7.8s, peak mem 2011MB, user 338.5s, sys 5.0s, output queue size 689
progress 65% @chr12:45000001, elapsed 12.9s, est remaining 7.0s, peak mem 2034MB, user 376.6s, sys 5.2s, output queue size 672
progress 70% @chr14:76000001, elapsed 13.7s, est remaining 5.9s, peak mem 2034MB, user 395.0s, sys 5.5s, output queue size 833
progress 75% @chr16:38000001, elapsed 15.1s, est remaining 5.0s, peak mem 2064MB, user 438.6s, sys 5.8s, output queue size 995
progress 80% @chr18:27000001, elapsed 17.1s, est remaining 4.3s, peak mem 2064MB, user 487.5s, sys 6.2s, output queue size 1157
progress 85% @chr20:23000001, elapsed 19.5s, est remaining 3.4s, peak mem 2064MB, user 566.1s, sys 6.8s, output queue size 785
progress 90% @chrX:43000001, elapsed 20.7s, est remaining 2.3s, peak mem 2094MB, user 606.6s, sys 7.0s, output queue size 947
progress 95% @chrY:53000001, elapsed 21.5s, est remaining 1.1s, peak mem 2094MB, user 623.5s, sys 7.2s, output queue size 1109
progress 100% @chr22:23000001, elapsed 24.8s, est remaining 0.0s, peak mem 2094MB, user 677.6s, sys 7.6s, output queue size 3635
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 15264075202
reads: 312198066
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 283.323 user 5.942 sys 289.335 real
done: 1 calls 0.028 user 0.009 sys 0.040 real
exec_no_coor: 1 calls 0.000 user 0.000 sys 0.003 real
execute: 1 calls 0.004 user 0.002 sys 24.824 real
idle: 161 calls 0.149 user 0.001 sys 114.897 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 2195800064 mem 678.708 user 7.709 sys 26.138 real