[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXYfgBCF/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXYfgBCF/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXYfgBCF/chr19_15162349-15162662.bed.gz.tbi
[2026-05-27T04:54:22.755733Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T04:54:22.816160Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T04:54:22.816199Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T04:54:22.816204Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T04:54:22.816209Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXYfgBCF'
[2026-05-27T04:54:22.816213Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T04:54:22.816218Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T04:54:22.816222Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T04:54:22.816225Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T04:54:22.816229Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T04:54:22.816232Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T04:54:22.816236Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T04:54:22.816239Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T04:54:22.816243Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T04:54:22.816940Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T04:54:22.817046Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T04:54:22.822716Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T04:54:22.823493Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T04:54:22.823650Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T04:54:22.823816Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T04:54:22.824090Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.824594Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.825091Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.825270Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.825760Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.825853Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T04:54:22.826054Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.826187Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.826264Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.826792Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.827153Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.828304Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.828868Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.829033Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T04:54:22.829553Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.829761Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.830038Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.830104Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.830216Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.830281Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.830466Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.830529Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.830639Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.830705Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.830814Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.830875Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.830989Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.831087Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.831373Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.831645Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.831757Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.831837Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.831946Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.832008Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.832116Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.832182Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.832291Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.832355Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.832462Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.832527Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.832651Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.832990Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.833386Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.833451Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.834056Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.834123Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.834236Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.834300Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.834615Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.835065Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.835182Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.835249Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.835359Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.835423Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.835543Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.835609Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.835718Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.835787Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.835893Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.835956Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.836134Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.836235Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.836493Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.836980Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.837532Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.837604Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.852935Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.853194Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.853266Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.853430Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.853510Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.853598Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.853662Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.853770Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.853841Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.855333Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T04:54:22.856138Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:22.856910Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:22.857446Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:22.859349Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-05-27T04:54:22.860648Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:22.863648Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:22.864026Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-05-27T04:54:22.867105Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:22.867913Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-05-27T04:54:22.870206Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-05-27T04:54:22.870786Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-05-27T04:54:22.871068Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-05-27T04:54:22.873301Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-05-27T04:54:22.876723Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-05-27T04:54:22.880801Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-05-27T04:54:22.881276Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-05-27T04:54:23.740812Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:23.741663Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-05-27T04:54:23.745193Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-05-27T04:54:24.056570Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.057403Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.060377Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-05-27T04:54:24.121882Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.122768Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.125872Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-05-27T04:54:24.187275Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.188138Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.191231Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-05-27T04:54:24.252769Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.252855Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.253614Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.253907Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.257390Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-05-27T04:54:24.258457Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-05-27T04:54:24.319047Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.319879Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.322998Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-05-27T04:54:24.562109Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-05-27T04:54:24.584536Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.584647Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.585634Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.585941Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.589343Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-05-27T04:54:24.590181Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-05-27T04:54:24.650633Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.651668Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.654583Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-05-27T04:54:24.684005Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.685640Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.686121Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.688389Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.690427Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-05-27T04:54:24.691443Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-05-27T04:54:24.753292Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.753408Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.754346Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.754784Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.758093Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-05-27T04:54:24.759081Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-05-27T04:54:24.819297Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.819430Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.820441Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.820914Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.824465Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-05-27T04:54:24.825756Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-05-27T04:54:24.935756Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.936701Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.939773Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-05-27T04:54:25.001039Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:25.001134Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:25.002056Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-05-27T04:54:25.002556Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-05-27T04:54:25.006030Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-05-27T04:54:25.007047Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-05-27T04:54:25.719113Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:25.719869Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-05-27T04:54:25.722826Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-05-27T04:54:25.752132Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:25.752894Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-05-27T04:54:25.756151Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-05-27T04:54:25.817788Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:25.818634Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-05-27T04:54:25.821144Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-05-27T04:54:25.851784Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:25.852515Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:25.855577Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-05-27T04:54:25.967128Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:25.967906Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:25.971292Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-05-27T04:54:25.975879Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:25.976509Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:25.979300Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-05-27T04:54:26.040702Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:26.041465Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-05-27T04:54:26.044773Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-05-27T04:54:26.406769Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:26.407560Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-05-27T04:54:26.411018Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-05-27T04:54:26.472287Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:26.473148Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-05-27T04:54:26.476433Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-05-27T04:54:26.688221Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:26.689013Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-05-27T04:54:26.692402Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-05-27T04:54:26.753766Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:26.754529Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:26.757822Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-05-27T04:54:26.919662Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:26.921491Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:26.924756Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-05-27T04:54:26.986009Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:26.986730Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:26.989502Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-05-27T04:54:27.051299Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.052026Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.055207Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-05-27T04:54:27.116517Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.117201Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.120658Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-05-27T04:54:27.182109Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.182875Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.186354Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-05-27T04:54:27.191147Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.191802Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.194769Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-05-27T04:54:27.223877Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.224708Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.227899Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-05-27T04:54:27.228876Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.229432Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.232583Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-05-27T04:54:27.444368Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.445119Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.448447Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-05-27T04:54:27.509970Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.510639Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.513784Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-05-27T04:54:27.574908Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.575552Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.578557Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-05-27T04:54:27.640061Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.640761Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.643854Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-05-27T04:54:27.705156Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.705803Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.709219Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-05-27T04:54:27.770334Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.770859Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.773760Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-05-27T04:54:27.835015Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.835679Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.839070Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-05-27T04:54:27.900322Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.901139Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.904252Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-05-27T04:54:27.965478Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.966226Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.969526Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-05-27T04:54:28.180950Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.181044Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.181647Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.181982Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.185219Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-05-27T04:54:28.214397Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.215186Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.217509Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-05-27T04:54:28.218186Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-05-27T04:54:28.219211Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.219289Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.219839Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.220122Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.223334Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-05-27T04:54:28.224155Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-05-27T04:54:28.236198Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.236906Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.239789Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-05-27T04:54:28.252930Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.260674Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.260732Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.276432Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.792518Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.793006Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.796139Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-05-27T04:54:28.825445Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.591723Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.592329Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.595212Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-05-27T04:54:29.656588Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.921443Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.922103Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.925167Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-05-27T04:54:29.986584Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.204933Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.205434Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.208332Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-05-27T04:54:31.237939Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.238221Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.238376Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.239155Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.239599Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.243416Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T04:54:31.244924Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T04:54:31.246127Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T04:54:31.272317Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.272490Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.272945Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.273156Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.273533Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.276382Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T04:54:31.277488Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T04:54:31.305698Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.305794Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.306025Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.308804Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T04:54:31.370692Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.389673Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T04:54:41.704867Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T04:54:41.704867Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] 
[2026-05-27T04:54:41.704867Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T04:54:41.704947Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] 
[2026-05-27T04:54:41.704954Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T04:54:41.704961Z] [nf-f64ef97e211561157de8ae4d752201ef-4b5f3-7fqgz] [593_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec