cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i HCC1395_BL.md.bam --algo AlignmentStat HCC1395_BL.sentieon.alignment_summary_metrics --algo InsertSizeMetricAlgo HCC1395_BL.sentieon.insert_size_metrics --algo QualDistribution HCC1395_BL.sentieon.quality_distribution_metrics --algo BaseDistributionByCycle HCC1395_BL.sentieon.base_distribution_by_cycle_metrics --algo MeanQualityByCycle HCC1395_BL.sentieon.quality_by_cycle_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:164000001, elapsed 0.0s, est remaining 0.5s, peak mem 81MB, user 0.1s, sys 0.3s, output queue size 55
progress 10% @chr2:74000001, elapsed 0.0s, est remaining 0.4s, peak mem 81MB, user 0.2s, sys 0.9s, output queue size 38
progress 15% @chr2:235000001, elapsed 0.1s, est remaining 0.4s, peak mem 81MB, user 0.2s, sys 1.4s, output queue size 32
progress 20% @chr3:154000001, elapsed 0.1s, est remaining 0.3s, peak mem 81MB, user 0.3s, sys 2.0s, output queue size 51
progress 25% @chr4:115000001, elapsed 0.1s, est remaining 0.3s, peak mem 81MB, user 0.3s, sys 2.5s, output queue size 38
progress 30% @chr5:86000001, elapsed 0.1s, est remaining 0.3s, peak mem 81MB, user 0.4s, sys 3.0s, output queue size 23
progress 35% @chr6:66000001, elapsed 0.1s, est remaining 0.3s, peak mem 81MB, user 0.4s, sys 3.6s, output queue size 8
progress 40% @chr7:58000001, elapsed 0.2s, est remaining 0.3s, peak mem 81MB, user 0.5s, sys 4.1s, output queue size 46
progress 45% @chr8:37000001, elapsed 0.2s, est remaining 0.2s, peak mem 81MB, user 0.6s, sys 4.6s, output queue size 34
progress 50% @chr9:74000001, elapsed 0.2s, est remaining 0.2s, peak mem 81MB, user 0.7s, sys 5.1s, output queue size 47
progress 55% @chr10:97000001, elapsed 0.2s, est remaining 0.2s, peak mem 81MB, user 0.8s, sys 5.6s, output queue size 31
progress 60% @chr11:121000001, elapsed 0.2s, est remaining 0.2s, peak mem 81MB, user 0.8s, sys 6.2s, output queue size 2
progress 65% @chr13:15000001, elapsed 0.3s, est remaining 0.1s, peak mem 81MB, user 0.9s, sys 6.7s, output queue size 3
progress 70% @chr14:61000001, elapsed 0.3s, est remaining 0.1s, peak mem 81MB, user 1.0s, sys 7.2s, output queue size 13
progress 75% @chr16:12000001, elapsed 0.3s, est remaining 0.1s, peak mem 81MB, user 1.0s, sys 7.8s, output queue size 1
progress 80% @chr17:57000001, elapsed 0.3s, est remaining 0.1s, peak mem 81MB, user 1.0s, sys 8.3s, output queue size 27
progress 85% @chr20:21000001, elapsed 0.3s, est remaining 0.1s, peak mem 81MB, user 1.1s, sys 8.9s, output queue size 3
progress 90% @chrX:42000001, elapsed 0.4s, est remaining 0.0s, peak mem 106MB, user 1.5s, sys 9.2s, output queue size 114
progress 95% @chrY:40000001, elapsed 0.4s, est remaining 0.0s, peak mem 127MB, user 2.1s, sys 9.4s, output queue size 276
progress 100% @chr21:41000001, elapsed 1.1s, est remaining 0.0s, peak mem 169MB, user 5.1s, sys 9.6s, output queue size 3664
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: AlignmentStat InsertSizeMetricAlgo QualDistribution BaseDistributionByCycle MeanQualityByCycle
license: sentieon:Metrics=31
input file size: 51395954
reads: 1001089
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1.155 user 4.705 sys 6.442 real
done: 1 calls 0.000 user 0.000 sys 0.001 real
exec_no_coor: 1 calls 0.000 user 0.000 sys 0.000 real
execute: 1 calls 0.001 user 0.001 sys 1.149 real
idle: 72 calls 0.032 user 0.027 sys 50.498 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 178036736 mem 5.423 user 10.352 sys 2.199 real