cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta -t 12 --interval chr14_64122012-64122133.bed.gz -i Sig_18_Blood.recalibrated.bam --algo Haplotyper -d dbsnp_146.hg38.vcf.gz --emit_mode variant germline_control_2.haplotyper.chr14_64122012-64122133.bed.unfiltered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr14:100880712, elapsed 0.0s, est remaining 0.8s, peak mem 82MB, user 0.1s, sys 0.1s, output queue size 2134
progress 10% @chr15:40899144, elapsed 0.1s, est remaining 0.7s, peak mem 91MB, user 0.1s, sys 0.2s, output queue size 4373
progress 15% @chr15:63774694, elapsed 0.1s, est remaining 0.7s, peak mem 103MB, user 0.2s, sys 0.3s, output queue size 1544
progress 20% @chr15:87989891, elapsed 0.2s, est remaining 0.7s, peak mem 112MB, user 0.2s, sys 0.4s, output queue size 3830
progress 25% @chr16:1964276, elapsed 0.2s, est remaining 0.6s, peak mem 118MB, user 0.2s, sys 0.4s, output queue size 5530
progress 30% @chr16:23510321, elapsed 0.2s, est remaining 0.6s, peak mem 129MB, user 0.3s, sys 0.6s, output queue size 7998
progress 35% @chr16:66578831, elapsed 0.3s, est remaining 0.5s, peak mem 139MB, user 0.3s, sys 0.7s, output queue size 10603
progress 40% @chr16:89286670, elapsed 0.3s, est remaining 0.5s, peak mem 153MB, user 0.3s, sys 0.8s, output queue size 13075
progress 45% @chr17:10309522, elapsed 0.4s, est remaining 0.5s, peak mem 163MB, user 0.4s, sys 1.0s, output queue size 15691
progress 50% @chr17:36330448, elapsed 0.4s, est remaining 0.4s, peak mem 174MB, user 0.4s, sys 1.2s, output queue size 18289
progress 55% @chr17:45162750, elapsed 0.5s, est remaining 0.4s, peak mem 180MB, user 0.4s, sys 1.3s, output queue size 20552
progress 60% @chr17:68395073, elapsed 0.5s, est remaining 0.3s, peak mem 193MB, user 0.5s, sys 1.4s, output queue size 23060
progress 65% @chr18:5433903, elapsed 0.5s, est remaining 0.3s, peak mem 205MB, user 0.5s, sys 1.6s, output queue size 25780
progress 70% @chr18:62570103, elapsed 0.6s, est remaining 0.3s, peak mem 216MB, user 0.6s, sys 1.8s, output queue size 28157
progress 75% @chr19:6919548, elapsed 0.6s, est remaining 0.2s, peak mem 225MB, user 0.6s, sys 1.9s, output queue size 30545
progress 80% @chr19:15256964, elapsed 0.7s, est remaining 0.2s, peak mem 234MB, user 0.6s, sys 2.0s, output queue size 32801
progress 85% @chr19:36915130, elapsed 0.7s, est remaining 0.1s, peak mem 241MB, user 0.6s, sys 2.2s, output queue size 35115
progress 90% @chr19:46493558, elapsed 0.8s, est remaining 0.1s, peak mem 253MB, user 0.7s, sys 2.3s, output queue size 37291
progress 95% @chr20:36905333, elapsed 0.8s, est remaining 0.0s, peak mem 262MB, user 0.7s, sys 2.4s, output queue size 39928
progress 100% @chr20:64273221, elapsed 0.8s, est remaining 0.0s, peak mem 273MB, user 0.7s, sys 2.6s, output queue size 42366
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 12 max 192
algo: Haplotyper
license: sentieon:Haplotyper=12
input file size: 74732894
output file size: 22311
reads: 1001133
contig: 48152 intervals 9000028 bases
active: 97912 calls 0.000 user 0.010 sys 0.020 real
advance: 49760 calls 0.009 user 0.005 sys 0.025 real
calc: 97912 calls 0.000 user 0.000 sys 0.020 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.000 user 0.011 sys 1.511 real
fetch: 97912 calls 0.000 user 0.004 sys 0.021 real
fetch_ref: 97912 calls 0.090 user 0.030 sys 0.384 real
idle: 39 calls 0.007 user 0.036 sys 20.467 real
init: 1 calls 0.031 user 0.009 sys 0.043 real
region: 97912 calls 0.003 user 0.000 sys 0.024 real
tracker: 97912 calls 0.042 user 0.017 sys 0.094 real
overall: 289669120 mem 1.487 user 5.032 sys 2.636 real
ls: cannot access '*.g.vcf.gz': No such file or directory
ls: cannot access '*.g.vcf.gz.tbi': No such file or directory