Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/861abd9e59bfe6efe4624dc7c240a2/germline_control_1.haplotyper.unfiltered.vcf.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f7/e03b9e0a0d456ad38895cdace4059a/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f7/e03b9e0a0d456ad38895cdace4059a/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/861abd9e59bfe6efe4624dc7c240a2/germline_control_1.haplotyper.unfiltered.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/a4f4fab6897c3bfc78449702b1c3c5/germline_control_1.forcecall.unfiltered.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/a4f4fab6897c3bfc78449702b1c3c5/germline_control_1.forcecall.unfiltered.vcf.gz.tbi
==> STAGING COMPLETE (6 inputs)

Checking the headers and starting positions of 2 files
Writing to /tmp/bcftools.PXvLvV
Merging 1 temporary files
Done
Cleaning