Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2a/26eb6f590c214a553534b1f14aa352/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f2/b50eb60a0e612bb22d965e7910ee77/germline_control_2.haplotyper.unfiltered.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2a/26eb6f590c214a553534b1f14aa352/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b9/c6da0997bf6ac83bf14df3e120a080/germline_control_2.forcecall.unfiltered.vcf.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f2/b50eb60a0e612bb22d965e7910ee77/germline_control_2.haplotyper.unfiltered.vcf.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b9/c6da0997bf6ac83bf14df3e120a080/germline_control_2.forcecall.unfiltered.vcf.gz
==> STAGING COMPLETE (6 inputs)

Writing to /tmp/bcftools.BJdIyh
Checking the headers and starting positions of 2 files
Merging 1 temporary files
Done
Cleaning