Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/7ad2f4ddc4c4a4c48994b5bb742c26/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/7ad2f4ddc4c4a4c48994b5bb742c26/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/c0245ecb359325a9a7b51ebaedf239/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/7ad2f4ddc4c4a4c48994b5bb742c26/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/9ccd49c586635acd0329f080eac1f7/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/9ccd49c586635acd0329f080eac1f7/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-mua1yyb4 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-05-27 04:59:00,530 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-05-27 04:59:01,325 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-05-27 04:59:01,494 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-05-27 04:59:02,531 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-05-27 04:59:02,727 - cnv_pipe.batch.run_model - INFO - Processing cluster 941 with 188 probes
2026-05-27 04:59:03,106 - cnv_pipe.batch.run_model.cluster941 - INFO - Child process started for cluster 941 with 188 probes
2026-05-27 04:59:59,196 - cnv_pipe.batch.run_model.cluster941 - INFO - Child process finished cluster 941. Wrote cluster_941_samples.csv and cluster_941_params.csv
2026-05-27 04:59:59,197 - cnv_pipe.batch.run_model - INFO - Cluster 941 finished in 56.47 seconds. Status: SUCCESS