Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/d22571e3d9e9e42365b5f4876a4019/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/d22571e3d9e9e42365b5f4876a4019/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/ec8113e90233d365a66d9c348393d6/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/d22571e3d9e9e42365b5f4876a4019/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/e00511e5e18a235ba28a0c79359f5c/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/e00511e5e18a235ba28a0c79359f5c/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-fjuodrw9 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-05-27 15:48:02,492 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-05-27 15:48:03,343 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-05-27 15:48:03,515 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-05-27 15:48:49,113 - cnv_pipe.batch.run_model - INFO - Loaded data with 185 samples
2026-05-27 15:48:49,390 - cnv_pipe.batch.run_model - INFO - Processing cluster 1010 with 196 probes
2026-05-27 15:48:49,819 - cnv_pipe.batch.run_model.cluster1010 - INFO - Child process started for cluster 1010 with 196 probes
2026-05-27 15:54:45,457 - cnv_pipe.batch.run_model.cluster1010 - INFO - Child process finished cluster 1010. Wrote cluster_1010_samples.csv and cluster_1010_params.csv
2026-05-27 15:54:45,459 - cnv_pipe.batch.run_model - INFO - Cluster 1010 finished in 356.07 seconds. Status: SUCCESS