Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f5/ed0ed8341e5ac3762e5f8f49f0e611/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr19_15162349-15162662.bed.gz.tbi
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/25/42f5334e31345bae82309fbb4f085c/HCC1395_BL.recalibrated.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/25/42f5334e31345bae82309fbb4f085c/HCC1395_BL.recalibrated.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr19_15162349-15162662.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f5/ed0ed8341e5ac3762e5f8f49f0e611/.command.run
==> STAGING COMPLETE (10 inputs)

[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXX9yHB95/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXX9yHB95/chr19_15162349-15162662.bed.gz.tbi

Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXX9yHB95/chr19_15162349-15162662.bed.gz.tbi
[2026-05-27T11:33:32.080792Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T11:33:32.090074Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T11:33:32.090109Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T11:33:32.090115Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T11:33:32.090120Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXX9yHB95'
[2026-05-27T11:33:32.090125Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T11:33:32.090130Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T11:33:32.090134Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T11:33:32.090138Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T11:33:32.090142Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T11:33:32.090145Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T11:33:32.090149Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T11:33:32.090153Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T11:33:32.090157Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T11:33:32.090790Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T11:33:32.090901Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T11:33:32.097035Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T11:33:32.097759Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T11:33:32.097928Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T11:33:32.098184Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T11:33:32.098477Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.098848Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.098938Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.099012Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.099133Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.099201Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.099321Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.099385Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.099506Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.099639Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.100079Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.100164Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.100364Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.100516Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.100980Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.101403Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.101583Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.101770Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.101920Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.104216Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.104488Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T11:33:32.104638Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.104958Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.105217Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.105335Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.105397Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.105530Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.105600Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.105715Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.105781Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.105890Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.105962Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.106083Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.106146Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.106391Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.106712Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.106827Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.106889Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.106999Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.107073Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.107182Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.107243Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.107352Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.107415Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.108390Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.108719Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.108842Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.108908Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.109091Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.109164Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.109276Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.109340Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.109453Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.109538Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.109661Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.109925Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.110380Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.110865Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.110981Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.111047Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.111159Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.111231Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.111347Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.111411Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.111522Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.111591Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.127883Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.128108Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.128186Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.128353Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.128422Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.128510Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.128577Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.128689Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.128763Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.130110Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T11:33:32.134008Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.134646Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.135092Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.135404Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.136292Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.137047Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.137950Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.138622Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.140772Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.141701Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-05-27T11:33:32.144260Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-05-27T11:33:32.147524Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-05-27T11:33:32.151462Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-05-27T11:33:32.153210Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-05-27T11:33:32.154738Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-05-27T11:33:32.156152Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-05-27T11:33:32.234797Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-05-27T11:33:32.257601Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.258452Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.261824Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-05-27T11:33:33.075051Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.076098Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.079431Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-05-27T11:33:33.190675Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.192122Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.196134Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-05-27T11:33:33.257127Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.258702Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.262692Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-05-27T11:33:33.373837Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.375712Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.379401Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-05-27T11:33:33.791198Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.791297Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.792275Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.792864Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.796430Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-05-27T11:33:33.797682Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-05-27T11:33:33.857506Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.858532Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.862226Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-05-27T11:33:34.023628Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.024972Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.028097Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-05-27T11:33:34.139489Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.140604Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.144638Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-05-27T11:33:34.205583Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.206821Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.210226Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-05-27T11:33:34.371872Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.373135Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.377123Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-05-27T11:33:34.488229Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.488484Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.489786Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.490268Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.493761Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-05-27T11:33:35.406885Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.408009Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.411861Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-05-27T11:33:35.623129Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.624391Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.627714Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-05-27T11:33:35.800588Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-05-27T11:33:35.839657Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.839802Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.840909Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.841579Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.845003Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-05-27T11:33:35.846212Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-05-27T11:33:35.906066Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.906888Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.910075Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-05-27T11:33:35.939408Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.940369Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.943878Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-05-27T11:33:36.155720Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.156919Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.160144Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-05-27T11:33:36.189514Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.190784Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.193920Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-05-27T11:33:36.198780Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.199769Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.202629Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-05-27T11:33:36.231902Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.233301Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.236495Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-05-27T11:33:36.241376Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.242846Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.245923Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-05-27T11:33:36.275132Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.276180Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.280054Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-05-27T11:33:36.340860Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.341907Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.345542Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-05-27T11:33:36.406231Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.406315Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.407115Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.407483Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.410912Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-05-27T11:33:36.411808Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-05-27T11:33:36.473124Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.473247Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.474478Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.475174Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.478908Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-05-27T11:33:36.479614Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-05-27T11:33:36.540042Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.541034Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.544138Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-05-27T11:33:37.408447Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.409183Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.412454Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-05-27T11:33:37.473791Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.474606Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.477206Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.478014Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.478426Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-05-27T11:33:37.481120Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-05-27T11:33:37.542453Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.543199Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.546133Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-05-27T11:33:37.607420Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.608156Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.611017Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-05-27T11:33:37.674162Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.674983Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.678213Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-05-27T11:33:37.739204Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.739849Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.743075Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-05-27T11:33:37.954593Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.955426Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.958718Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-05-27T11:33:37.987826Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.988557Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.991328Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-05-27T11:33:38.102969Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.103715Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.106689Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-05-27T11:33:38.135827Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.136583Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.139425Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-05-27T11:33:38.200759Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.201455Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.204704Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-05-27T11:33:38.316296Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.316856Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.319955Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-05-27T11:33:38.349004Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.349614Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.352358Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-05-27T11:33:38.365852Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.366438Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.369510Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-05-27T11:33:38.382458Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.383103Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.385944Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-05-27T11:33:38.415189Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.415766Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.418773Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-05-27T11:33:38.480309Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.480412Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.480987Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.481410Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.484617Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-05-27T11:33:38.485792Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-05-27T11:33:38.515344Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.516897Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.630992Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.631528Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.634817Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-05-27T11:33:38.663859Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:39.029006Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:39.029079Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:39.029515Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-05-27T11:33:39.030313Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:39.033328Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-05-27T11:33:39.033983Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-05-27T11:33:39.094738Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:39.094930Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:39.359751Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:39.360253Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:39.363400Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-05-27T11:33:39.392449Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:39.456558Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:39.457060Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-05-27T11:33:39.460095Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-05-27T11:33:39.521385Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.287365Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.287856Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.290494Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-05-27T11:33:40.319849Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.320109Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.320249Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.320559Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.320911Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.324635Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T11:33:40.325871Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T11:33:40.326789Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T11:33:40.353979Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.354056Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.354078Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.354294Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.354548Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.357252Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T11:33:40.358215Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T11:33:40.386500Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.386572Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.386744Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.389279Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T11:33:40.418746Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:42.687524Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T11:33:50.978721Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T11:33:50.978721Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] 
[2026-05-27T11:33:50.978721Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T11:33:50.978788Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] 
[2026-05-27T11:33:50.978796Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T11:33:50.978802Z] [nf-f5ed0ed8341e5ac3762e5f8f49f0e611-99aea-g5tvt] [610_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec