[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXQcFeuM/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXQcFeuM/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXQcFeuM/chr19_15162349-15162662.bed.gz.tbi
[2026-05-27T11:33:39.418515Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T11:33:39.419603Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T11:33:39.419643Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T11:33:39.419650Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T11:33:39.419656Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXQcFeuM'
[2026-05-27T11:33:39.419660Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T11:33:39.419668Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T11:33:39.419672Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T11:33:39.419677Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T11:33:39.419681Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T11:33:39.419685Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T11:33:39.419689Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T11:33:39.419693Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T11:33:39.419698Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T11:33:39.420774Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T11:33:39.420896Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T11:33:39.426660Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T11:33:39.427361Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T11:33:39.427541Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T11:33:39.427720Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T11:33:39.427997Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.428434Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.428529Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.428602Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.428721Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.428788Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.428905Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.428968Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.429093Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.429424Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.429649Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T11:33:39.429958Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.430522Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.431074Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.431230Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.432771Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.433641Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T11:33:39.433840Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.434241Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.434479Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.434675Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.434746Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.434866Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.434938Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.435050Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.435113Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.435231Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.435300Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.435411Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.435540Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.435940Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.436230Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.436371Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.436471Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.436584Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.436650Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.436762Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.436829Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.436946Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.437026Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.437138Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.437255Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.437685Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.437748Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.438374Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.438440Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.438553Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.438668Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.438890Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.439459Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.439664Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.439758Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.439940Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.440036Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.440201Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.440288Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.440739Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.441240Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.441380Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.441462Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.441585Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.441658Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.441815Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.441894Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.442006Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.442084Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.457774Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.457912Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.457989Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.458159Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.458234Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.458324Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.458391Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.458507Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.460101Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.460206Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T11:33:39.463450Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:39.464024Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:39.464341Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-05-27T11:33:39.464712Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-05-27T11:33:39.465763Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-05-27T11:33:39.466498Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:39.469719Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:39.470819Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-05-27T11:33:39.471373Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-05-27T11:33:39.471715Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-05-27T11:33:39.472319Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-05-27T11:33:39.476319Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-05-27T11:33:39.478833Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-05-27T11:33:39.482564Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-05-27T11:33:39.483561Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-05-27T11:33:39.486892Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-05-27T11:33:39.487924Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-05-27T11:33:39.592011Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:39.593016Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:39.597440Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-05-27T11:33:40.911966Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.912887Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.915810Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-05-27T11:33:40.928830Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.929920Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.933220Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-05-27T11:33:40.994218Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.995282Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.998480Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-05-27T11:33:41.109968Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:41.111112Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:41.114719Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-05-27T11:33:41.225939Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:41.226913Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-05-27T11:33:41.230386Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-05-27T11:33:41.391871Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:41.391987Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:41.392759Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:41.393242Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-05-27T11:33:41.396423Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-05-27T11:33:41.397362Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-05-27T11:33:41.457790Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:41.457914Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:41.458758Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:41.459072Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:41.462667Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-05-27T11:33:41.463417Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-05-27T11:33:41.475290Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:41.476138Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:41.479069Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-05-27T11:33:41.508322Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:41.509097Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-05-27T11:33:41.511108Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:41.511909Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-05-27T11:33:41.512177Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-05-27T11:33:41.515027Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-05-27T11:33:41.519998Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:41.520697Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-05-27T11:33:41.523190Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-05-27T11:33:41.552642Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:41.553514Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:41.557036Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-05-27T11:33:41.569767Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:41.569935Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:41.570655Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-05-27T11:33:41.570986Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-05-27T11:33:41.574581Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-05-27T11:33:41.575480Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-05-27T11:33:41.635752Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:41.636546Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:41.639606Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-05-27T11:33:41.669060Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:41.669943Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-05-27T11:33:41.673462Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-05-27T11:33:42.085756Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:42.086610Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-05-27T11:33:42.090380Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-05-27T11:33:42.151218Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:42.152177Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:42.156118Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-05-27T11:33:42.618592Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:42.619400Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-05-27T11:33:42.622775Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-05-27T11:33:42.635735Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:42.636625Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:42.640050Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-05-27T11:33:42.669101Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:42.669944Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-05-27T11:33:42.672784Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-05-27T11:33:42.673536Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:42.674067Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-05-27T11:33:42.676531Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-05-27T11:33:42.707267Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:42.707377Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:42.707413Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:42.708173Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-05-27T11:33:42.708449Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-05-27T11:33:42.708622Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-05-27T11:33:42.712678Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-05-27T11:33:42.713859Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-05-27T11:33:42.714997Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-05-27T11:33:42.742620Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:42.742691Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:42.743281Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:42.743595Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:42.746666Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-05-27T11:33:42.747585Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-05-27T11:33:42.776024Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:42.776823Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:42.779714Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-05-27T11:33:43.041503Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:43.042239Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:43.045841Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-05-27T11:33:43.106593Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:43.107347Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:43.110521Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-05-27T11:33:43.222168Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:43.223193Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:43.226473Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-05-27T11:33:43.287466Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:43.288362Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:43.291079Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-05-27T11:33:43.352585Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:43.353421Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:43.357218Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-05-27T11:33:43.418203Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:43.419145Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:43.422782Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-05-27T11:33:43.584123Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:43.584785Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:43.588027Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-05-27T11:33:43.649088Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:43.649805Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:43.652621Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-05-27T11:33:43.714172Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:43.714823Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:43.717746Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-05-27T11:33:43.718788Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:43.719242Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-05-27T11:33:43.721904Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-05-27T11:33:43.783396Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:43.784163Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:43.787239Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-05-27T11:33:43.848718Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:43.849480Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-05-27T11:33:43.852720Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-05-27T11:33:44.014224Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:44.014894Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:44.018353Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-05-27T11:33:44.079515Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:44.080272Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:44.083490Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-05-27T11:33:44.144679Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:44.145426Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-05-27T11:33:44.148445Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-05-27T11:33:44.209981Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:44.210160Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:44.210923Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:44.211478Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:44.215083Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-05-27T11:33:44.216026Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-05-27T11:33:44.276552Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:44.277215Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-05-27T11:33:44.280582Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-05-27T11:33:44.792902Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:44.793455Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-05-27T11:33:44.796344Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-05-27T11:33:44.857799Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:45.072562Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:45.073293Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-05-27T11:33:45.076366Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-05-27T11:33:45.137571Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:45.252170Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:45.252723Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:45.255452Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-05-27T11:33:45.285070Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:45.550316Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:45.551008Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-05-27T11:33:45.554474Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-05-27T11:33:45.615636Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:45.880428Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:45.880958Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:45.883598Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-05-27T11:33:45.945182Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:45.945286Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:45.945766Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-05-27T11:33:45.948573Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-05-27T11:33:46.010174Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:46.475749Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:46.476290Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:46.479258Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-05-27T11:33:46.540660Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:46.955849Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:46.956371Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:46.959006Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-05-27T11:33:47.020447Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:47.020764Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:47.020947Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T11:33:47.021291Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T11:33:47.021581Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T11:33:47.025747Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T11:33:47.027070Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T11:33:47.028176Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T11:33:47.054566Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:47.054657Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:47.054681Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:47.054929Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T11:33:47.055208Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T11:33:47.057691Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T11:33:47.058441Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T11:33:47.087322Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:47.087422Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:47.087639Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T11:33:47.089967Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T11:33:47.119653Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:49.990872Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T11:33:58.308647Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T11:33:58.308647Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] 
[2026-05-27T11:33:58.308647Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T11:33:58.308699Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] 
[2026-05-27T11:33:58.308705Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T11:33:58.308712Z] [nf-d9c14a9083a16199d65c08547df64507-2f31e-7bpl9] [598_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec