Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/d87753f97c3f3eb1df8c1b837d7772/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/d87753f97c3f3eb1df8c1b837d7772/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4b/b66aba058a3c62f6e70309bde2f9ef/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/d87753f97c3f3eb1df8c1b837d7772/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/a491df04e51e4670cfeab573813871/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/a491df04e51e4670cfeab573813871/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-5tplhgbk because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-05-27 11:38:06,310 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-05-27 11:38:07,124 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-05-27 11:38:07,298 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-05-27 11:38:08,307 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-05-27 11:38:08,506 - cnv_pipe.batch.run_model - INFO - Processing cluster 812 with 174 probes
2026-05-27 11:38:08,880 - cnv_pipe.batch.run_model.cluster812 - INFO - Child process started for cluster 812 with 174 probes
2026-05-27 11:39:02,707 - cnv_pipe.batch.run_model.cluster812 - INFO - Child process finished cluster 812. Wrote cluster_812_samples.csv and cluster_812_params.csv
2026-05-27 11:39:02,709 - cnv_pipe.batch.run_model - INFO - Cluster 812 finished in 54.20 seconds. Status: SUCCESS