Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/2ef7d0d76e7bbe6fa73bbdbcc429b7/HCC1395_tumor.recalibrated.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e0/a4f23461605bb633e8da1d0e04e202/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/2ef7d0d76e7bbe6fa73bbdbcc429b7/HCC1395_tumor.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e0/a4f23461605bb633e8da1d0e04e202/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr1_68991-70108.bed.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr1_68991-70108.bed.gz.tbi
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-05-27T11:33:32.292860Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T11:33:32.296699Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T11:33:32.296713Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T11:33:32.296717Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T11:33:32.296721Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXfD9D95'
[2026-05-27T11:33:32.296725Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T11:33:32.296731Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T11:33:32.296734Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T11:33:32.296738Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T11:33:32.296742Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T11:33:32.296746Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T11:33:32.296749Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T11:33:32.296753Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T11:33:32.296757Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T11:33:32.297383Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T11:33:32.297554Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T11:33:32.303482Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T11:33:32.304252Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T11:33:32.304423Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T11:33:32.304886Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T11:33:32.305168Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.305558Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.305658Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.305731Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.305849Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.305917Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.306039Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.306102Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.306238Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.306501Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.306796Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.306940Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.307044Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.307183Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.307250Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.307409Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.307715Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.308353Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.308524Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.311236Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.311602Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.311938Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T11:33:32.312022Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.312097Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.312209Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.312272Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.312391Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.312455Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.312756Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.313009Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.313124Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.313190Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.313299Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.313387Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.313516Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.313621Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.313741Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.313806Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.313919Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.313982Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.314242Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.314792Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.314996Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.315076Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.315535Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.315609Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.315828Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.316460Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.316598Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.316667Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.316783Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.316850Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.316965Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.317028Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.317140Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.317203Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.317319Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.317402Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.317768Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.318355Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.318537Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.318609Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.318732Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.318799Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.318918Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.318989Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.319105Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.319173Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.333742Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.333894Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.333972Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.334159Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.334229Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.334345Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.336600Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.337288Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.337370Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.337436Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T11:33:32.340846Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.341512Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.341773Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.342378Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.344553Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0000] Task initiated on local node
[2026-05-27T11:33:32.344875Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.345340Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.345980Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.346844Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.347891Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.351418Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0009] Task initiated on local node
[2026-05-27T11:33:32.355710Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-05-27T11:33:32.358192Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0014] Task initiated on local node
[2026-05-27T11:33:32.361697Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0019] Task initiated on local node
[2026-05-27T11:33:32.363735Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0001] Task initiated on local node
[2026-05-27T11:33:32.364108Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0015] Task initiated on local node
[2026-05-27T11:33:32.367373Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-05-27T11:33:33.670431Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.672059Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.675797Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-05-27T11:33:34.489186Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.489312Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.490251Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.490802Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.494229Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-05-27T11:33:34.495229Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0003] Task initiated on local node
[2026-05-27T11:33:34.555318Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.556353Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.559507Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0008] Task initiated on local node
[2026-05-27T11:33:34.588545Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.589684Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.592838Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-05-27T11:33:34.654541Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.655596Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.658438Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0011] Task initiated on local node
[2026-05-27T11:33:34.719888Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.720843Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.723833Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-05-27T11:33:34.785245Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.786221Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.789928Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0016] Task initiated on local node
[2026-05-27T11:33:34.951627Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.952618Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.955709Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0014] Task initiated on local node
[2026-05-27T11:33:35.016770Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.017634Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.020665Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-05-27T11:33:35.049796Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.050579Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.053585Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_000_chr1_0000] Task initiated on local node
[2026-05-27T11:33:35.114888Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.115031Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.116073Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.116482Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.119868Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0000] Task initiated on local node
[2026-05-27T11:33:35.120932Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-05-27T11:33:35.180926Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.181082Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.182152Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.182515Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.185778Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0019] Task initiated on local node
[2026-05-27T11:33:35.186623Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-05-27T11:33:35.246944Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.247037Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.247836Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.248125Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.251893Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0017] Task initiated on local node
[2026-05-27T11:33:35.252869Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0007] Task initiated on local node
[2026-05-27T11:33:35.313350Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.314407Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.317458Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0005] Task initiated on local node
[2026-05-27T11:33:35.479072Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.480005Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.483810Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-05-27T11:33:35.544682Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.545690Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.548687Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0002] Task initiated on local node
[2026-05-27T11:33:35.811025Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.811926Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.815151Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-05-27T11:33:35.876230Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.877016Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.879871Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0011] Task initiated on local node
[2026-05-27T11:33:35.941512Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.942363Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.945676Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0013] Task initiated on local node
[2026-05-27T11:33:36.257684Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.257801Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.258669Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.259285Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.262502Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0016] Task initiated on local node
[2026-05-27T11:33:36.263610Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-05-27T11:33:36.323639Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.323749Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.324588Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.325167Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.328261Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-05-27T11:33:36.329512Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-05-27T11:33:36.391728Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.391824Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.392611Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.392896Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.396674Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0009] Task initiated on local node
[2026-05-27T11:33:36.398026Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0012] Task initiated on local node
[2026-05-27T11:33:36.457931Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.458664Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.461662Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-05-27T11:33:36.523124Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.523915Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.526865Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-05-27T11:33:36.638460Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.639634Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.643205Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-05-27T11:33:36.704037Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.705595Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.709360Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-05-27T11:33:37.472132Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.472938Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.476097Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0007] Task initiated on local node
[2026-05-27T11:33:37.537447Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.538633Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.542231Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-05-27T11:33:37.653291Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.654258Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.657381Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0003] Task initiated on local node
[2026-05-27T11:33:37.686555Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.687478Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.690913Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-05-27T11:33:37.752144Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.752349Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.753559Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.754055Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.757086Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0005] Task initiated on local node
[2026-05-27T11:33:37.758131Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0001] Task initiated on local node
[2026-05-27T11:33:37.818426Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.818508Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.819144Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.819440Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.823340Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0006] Task initiated on local node
[2026-05-27T11:33:37.823969Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-05-27T11:33:38.084294Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.084985Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.087981Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0015] Task initiated on local node
[2026-05-27T11:33:38.149950Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.150639Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.153426Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0017] Task initiated on local node
[2026-05-27T11:33:38.215310Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.216057Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.219373Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0018] Task initiated on local node
[2026-05-27T11:33:38.631997Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.632685Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.635755Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0008] Task initiated on local node
[2026-05-27T11:33:38.664847Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.664945Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.665551Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.665869Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.669088Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0002] Task initiated on local node
[2026-05-27T11:33:38.670212Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0004] Task initiated on local node
[2026-05-27T11:33:38.730620Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.730720Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.731320Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.731596Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.734813Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0013] Task initiated on local node
[2026-05-27T11:33:38.764627Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0012] Task initiated on local node
[2026-05-27T11:33:38.795881Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.795988Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.796557Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.796835Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.800234Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0020] Task initiated on local node
[2026-05-27T11:33:38.801172Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0010] Task initiated on local node
[2026-05-27T11:33:38.961848Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.962466Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.965557Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0006] Task initiated on local node
[2026-05-27T11:33:39.026593Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:39.026689Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:39.027221Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:39.030331Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-05-27T11:33:39.091281Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:39.305877Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:39.306406Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-05-27T11:33:39.309052Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0010] Task initiated on local node
[2026-05-27T11:33:39.310155Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:39.310629Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:39.312950Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-05-27T11:33:39.342511Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:39.344192Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:39.345532Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:39.345905Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:39.348308Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-05-27T11:33:39.378052Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:39.743202Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:39.743717Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-05-27T11:33:39.746348Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0018] Task initiated on local node
[2026-05-27T11:33:39.807777Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.373235Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.373761Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.376540Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0004] Task initiated on local node
[2026-05-27T11:33:40.405939Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.570444Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.570900Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.573268Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0020] Task initiated on local node
[2026-05-27T11:33:40.602856Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.603102Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.603223Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.603579Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.604224Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.607831Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T11:33:40.609292Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T11:33:40.609620Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T11:33:40.637466Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.637541Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.637566Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.637773Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.638074Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.640411Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T11:33:40.641753Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T11:33:40.669890Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.669953Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.670140Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.672394Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T11:33:40.701953Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:42.870406Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T11:33:51.185255Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T11:33:51.185255Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] 
[2026-05-27T11:33:51.185255Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T11:33:51.185318Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] 
[2026-05-27T11:33:51.185324Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T11:33:51.185331Z] [nf-e0a4f23461605bb633e8da1d0e04e202-7483e-vpdpm] [616_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec