File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/b7b70754bade0be8f53c5cb1e42818/.command.err
Size
62.0 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_1;chr19_15162349-15162662.bed)
Attempt

Content

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[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXcILRJq/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXcILRJq/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXcILRJq/chr19_15162349-15162662.bed.gz.tbi
[2026-05-27T11:33:29.433313Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T11:33:29.433924Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T11:33:29.433937Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T11:33:29.433941Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T11:33:29.433945Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXcILRJq'
[2026-05-27T11:33:29.433949Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T11:33:29.433955Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T11:33:29.433958Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T11:33:29.433962Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T11:33:29.433966Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T11:33:29.433969Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T11:33:29.433973Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T11:33:29.433977Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T11:33:29.433980Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T11:33:29.434302Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T11:33:29.434400Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T11:33:29.440267Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T11:33:29.440943Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T11:33:29.441125Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T11:33:29.441446Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T11:33:29.441782Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.442245Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.442366Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.442471Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.442589Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.442656Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.442778Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.442842Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.443026Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.443387Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.443585Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.443777Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.444012Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.444639Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.445045Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.447466Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.447940Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.448294Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T11:33:29.448728Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.448808Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.449033Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.449108Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.449231Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.449302Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.449429Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.449501Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.449653Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.449983Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.450224Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.450293Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.450404Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.450484Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.450645Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.450709Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.450821Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.450886Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.451002Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.451069Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.451191Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.451395Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.451809Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.451878Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.452039Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.452106Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.452726Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.452871Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.453430Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.453505Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.453687Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.453755Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.453867Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.453932Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.454042Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.454109Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.454224Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.454286Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.454574Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.455013Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.455128Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.455197Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.455311Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.455373Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.455485Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.455549Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.455656Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.455727Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.472575Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.473101Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.473183Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.473387Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.473483Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.473583Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.473654Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.473778Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.473859Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.475713Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T11:33:29.479752Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.480385Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.480812Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.481277Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.481978Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.482436Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.483110Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.485641Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.485966Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-05-27T11:33:29.486831Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.493328Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-05-27T11:33:29.499181Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-05-27T11:33:29.499730Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-05-27T11:33:29.502235Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-05-27T11:33:29.504611Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-05-27T11:33:29.504868Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-05-27T11:33:29.505863Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-05-27T11:33:29.604049Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.604980Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.607886Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-05-27T11:33:29.669045Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.669986Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.673333Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-05-27T11:33:30.637386Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.638388Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.641954Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-05-27T11:33:30.753448Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.754382Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.758009Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-05-27T11:33:30.819389Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.820380Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.823549Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-05-27T11:33:31.086181Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.087073Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.090869Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-05-27T11:33:31.119748Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.120616Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.123678Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-05-27T11:33:31.185043Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.185988Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.189405Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-05-27T11:33:31.701554Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.702724Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.706208Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-05-27T11:33:31.817480Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.818803Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.822404Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-05-27T11:33:31.883757Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.885198Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.889220Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-05-27T11:33:31.950096Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.950225Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.951323Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.951860Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.955368Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-05-27T11:33:31.956580Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-05-27T11:33:32.016905Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.017020Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.018101Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.018622Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.022278Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-05-27T11:33:32.053537Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-05-27T11:33:32.083480Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.084537Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.087848Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-05-27T11:33:32.399632Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.400319Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.403497Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-05-27T11:33:32.432649Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.433566Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.436656Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-05-27T11:33:32.698535Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.698613Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.698635Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.699327Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.699728Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.700290Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.704366Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-05-27T11:33:32.706033Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-05-27T11:33:32.707258Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-05-27T11:33:32.734787Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.735642Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.738942Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-05-27T11:33:33.101182Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.101931Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.104834Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-05-27T11:33:33.166246Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.167062Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.170570Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-05-27T11:33:33.231791Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.232577Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.235470Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-05-27T11:33:33.497776Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.497888Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.498675Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.498946Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.502423Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-05-27T11:33:33.502614Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-05-27T11:33:33.563491Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.563621Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.564328Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.565016Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.568530Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-05-27T11:33:33.569605Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-05-27T11:33:33.680215Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.680966Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.683961Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-05-27T11:33:33.745184Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.745930Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.749280Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-05-27T11:33:34.010767Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.011501Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.014959Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-05-27T11:33:34.276561Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.277278Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.280276Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-05-27T11:33:34.309718Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.310409Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.313333Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-05-27T11:33:34.318526Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.319124Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.321173Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.321892Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.322228Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-05-27T11:33:34.324611Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-05-27T11:33:34.338284Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.338945Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.342007Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-05-27T11:33:34.343028Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.343597Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.347417Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-05-27T11:33:34.407923Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.408023Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.408710Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.409104Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.412220Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-05-27T11:33:34.413558Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-05-27T11:33:34.442914Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.443426Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.446161Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-05-27T11:33:34.508055Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.508755Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.511555Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-05-27T11:33:34.540864Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.541485Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.544245Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-05-27T11:33:34.906954Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.907625Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.910536Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-05-27T11:33:34.939616Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.940229Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.943295Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-05-27T11:33:34.972512Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.973133Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.975953Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-05-27T11:33:34.980902Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.981404Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.984022Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-05-27T11:33:35.046584Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.046689Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.047202Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.047556Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.050485Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-05-27T11:33:35.051149Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-05-27T11:33:35.079834Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.080338Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.082760Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-05-27T11:33:35.083865Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.084239Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.086701Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-05-27T11:33:35.116166Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.116271Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.280722Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.280829Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.281277Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.281647Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.284425Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-05-27T11:33:35.285570Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-05-27T11:33:35.313617Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.313712Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.314151Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.315913Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.316837Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-05-27T11:33:35.347946Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.713215Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.713734Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.716419Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-05-27T11:33:35.746126Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.778265Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.778716Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.781402Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-05-27T11:33:35.810806Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.777518Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.777991Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.780672Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-05-27T11:33:36.809801Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.810037Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.810174Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.810588Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.810821Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.813913Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T11:33:36.815458Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T11:33:36.816721Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T11:33:36.842982Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.843064Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.843091Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.843313Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.843652Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.845955Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T11:33:36.846770Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T11:33:36.876217Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.876300Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.876484Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.878708Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T11:33:36.908398Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.030493Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T11:33:48.321992Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T11:33:48.321992Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] 
[2026-05-27T11:33:48.321992Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T11:33:48.322055Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] 
[2026-05-27T11:33:48.322062Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T11:33:48.322069Z] [nf-56b7b70754bade0be8f53c5cb1e42818-37285-rmzg4] [595_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec