File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/186bc94cd72161a46085fe9ae2a4ba/.command.err
Size
68.3 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_2;chr10_74133927-74134264.bed)
Attempt

Content

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[2026-05-27T11:33:31.600961Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T11:33:31.632564Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T11:33:31.632598Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T11:33:31.632603Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T11:33:31.632607Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXcBS2a6'
[2026-05-27T11:33:31.632610Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T11:33:31.632615Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T11:33:31.632619Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T11:33:31.632622Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T11:33:31.632626Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T11:33:31.632630Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T11:33:31.632633Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T11:33:31.632637Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T11:33:31.632640Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T11:33:31.633391Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T11:33:31.633544Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T11:33:31.639308Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T11:33:31.640142Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T11:33:31.640299Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T11:33:31.640422Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T11:33:31.640740Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.641415Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.641526Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.641605Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.641747Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.641838Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.642131Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.642370Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.642453Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.642740Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.642817Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.642960Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.643045Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.643705Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.644011Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.645240Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.645797Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.646080Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T11:33:31.646358Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.646479Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.646939Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.647007Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.647123Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.647190Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.647301Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.647362Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.647482Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.647546Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.647655Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.647720Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.647828Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.647914Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.648187Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.648495Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.648602Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.648667Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.648775Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.648839Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.648997Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.649060Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.649174Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.649251Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.649361Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.649429Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.649746Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.650069Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.650198Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.650262Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.650430Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.650506Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.650617Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.650684Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.650795Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.650857Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.650975Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.651037Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.651194Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.651400Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.651850Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.651914Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.652024Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.652086Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.652198Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.652260Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.652364Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.652428Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.652537Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.652597Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.652703Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.652766Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.653033Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.653487Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.653610Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.653675Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.669629Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.670130Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.670206Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.670379Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.670451Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.670538Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.670605Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.670716Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.670786Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T11:33:31.670832Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T11:33:31.678987Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.679642Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.679959Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.680208Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.680969Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.681727Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.682911Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.684086Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.684999Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.687203Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0008] Task initiated on local node
[2026-05-27T11:33:31.689763Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0000] Task initiated on local node
[2026-05-27T11:33:31.692349Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0010] Task initiated on local node
[2026-05-27T11:33:31.695505Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-05-27T11:33:31.697821Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-05-27T11:33:31.700669Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0004] Task initiated on local node
[2026-05-27T11:33:31.702089Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-05-27T11:33:31.703225Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0007] Task initiated on local node
[2026-05-27T11:33:31.801789Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.802595Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.806196Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0007] Task initiated on local node
[2026-05-27T11:33:32.217736Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.218568Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.221656Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-05-27T11:33:32.784325Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.786349Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.789818Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0005] Task initiated on local node
[2026-05-27T11:33:32.802787Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.803879Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.807209Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-05-27T11:33:32.868828Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.870014Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.873411Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0004] Task initiated on local node
[2026-05-27T11:33:32.902524Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.903643Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.907259Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0004] Task initiated on local node
[2026-05-27T11:33:32.920440Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.921449Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.924714Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-05-27T11:33:33.036175Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.037327Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.040944Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0002] Task initiated on local node
[2026-05-27T11:33:33.152486Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.153562Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.157049Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0008] Task initiated on local node
[2026-05-27T11:33:33.218676Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.219718Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.223446Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0009] Task initiated on local node
[2026-05-27T11:33:33.435423Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.436418Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.440863Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0007] Task initiated on local node
[2026-05-27T11:33:33.501403Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.502524Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.506400Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0003] Task initiated on local node
[2026-05-27T11:33:34.169571Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.170519Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.174196Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-05-27T11:33:34.235082Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.236035Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.239912Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0010] Task initiated on local node
[2026-05-27T11:33:34.301252Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.302387Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.305835Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0005] Task initiated on local node
[2026-05-27T11:33:34.335295Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.336364Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.339935Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-05-27T11:33:34.401088Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.401212Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.401965Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.402389Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.406580Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0000] Task initiated on local node
[2026-05-27T11:33:34.407984Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0009] Task initiated on local node
[2026-05-27T11:33:34.468285Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.469232Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.472700Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0007] Task initiated on local node
[2026-05-27T11:33:34.533962Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.535065Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.538739Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-05-27T11:33:34.600235Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.601218Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.604817Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0008] Task initiated on local node
[2026-05-27T11:33:34.633832Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.634923Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.638576Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0011] Task initiated on local node
[2026-05-27T11:33:34.750144Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.751177Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.755187Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0001] Task initiated on local node
[2026-05-27T11:33:34.916546Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.917396Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.920685Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0011] Task initiated on local node
[2026-05-27T11:33:34.981891Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.982042Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.982907Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.983403Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.987088Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0002] Task initiated on local node
[2026-05-27T11:33:34.988319Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0010] Task initiated on local node
[2026-05-27T11:33:35.048036Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.048832Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.052119Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0000] Task initiated on local node
[2026-05-27T11:33:35.263868Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.264949Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.268327Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-05-27T11:33:35.380167Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.381040Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.384040Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0009] Task initiated on local node
[2026-05-27T11:33:35.445678Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.446564Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.450182Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-05-27T11:33:35.511165Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.511975Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.515699Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0006] Task initiated on local node
[2026-05-27T11:33:35.827407Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.828297Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.831677Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0008] Task initiated on local node
[2026-05-27T11:33:35.893236Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.893337Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.894048Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.894352Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.898003Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0005] Task initiated on local node
[2026-05-27T11:33:35.899077Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0004] Task initiated on local node
[2026-05-27T11:33:35.959196Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.959368Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.960135Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.960664Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.964250Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0002] Task initiated on local node
[2026-05-27T11:33:35.965214Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-05-27T11:33:36.025534Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.026405Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.030095Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-05-27T11:33:36.091783Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.092552Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.096091Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-05-27T11:33:36.157210Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.157983Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.160776Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-05-27T11:33:36.222392Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.223223Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.226926Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-05-27T11:33:36.288271Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.288972Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.292476Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0003] Task initiated on local node
[2026-05-27T11:33:36.705165Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.705909Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.709528Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_009_chr10_0000] Task initiated on local node
[2026-05-27T11:33:36.770749Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.770859Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.771547Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.771860Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.774929Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-05-27T11:33:36.776170Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0001] Task initiated on local node
[2026-05-27T11:33:36.836373Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.836521Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.837229Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.837616Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.841348Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0003] Task initiated on local node
[2026-05-27T11:33:36.842189Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0001] Task initiated on local node
[2026-05-27T11:33:36.902857Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.903585Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.907220Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-05-27T11:33:36.968608Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.969432Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.973421Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0006] Task initiated on local node
[2026-05-27T11:33:36.973704Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.974195Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.977342Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0011] Task initiated on local node
[2026-05-27T11:33:37.038354Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.038503Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.039187Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.039584Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.043657Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0010] Task initiated on local node
[2026-05-27T11:33:37.044912Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-05-27T11:33:37.104646Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.105312Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.108934Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-05-27T11:33:37.170068Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.170777Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.174136Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-05-27T11:33:37.235571Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.236307Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.239829Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-05-27T11:33:37.301239Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.301849Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.304950Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-05-27T11:33:37.366432Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.367104Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.371057Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0006] Task initiated on local node
[2026-05-27T11:33:37.432338Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.433001Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.436788Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0009] Task initiated on local node
[2026-05-27T11:33:37.441258Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.441788Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.444578Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0003] Task initiated on local node
[2026-05-27T11:33:37.474084Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.474714Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.478508Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0002] Task initiated on local node
[2026-05-27T11:33:37.491075Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.523611Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.638197Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.638735Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.641849Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0005] Task initiated on local node
[2026-05-27T11:33:37.703478Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.169340Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.169913Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.173555Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0000] Task initiated on local node
[2026-05-27T11:33:38.234608Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.499432Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.500074Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.503250Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0011] Task initiated on local node
[2026-05-27T11:33:38.564611Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.879635Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.880273Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.883315Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0001] Task initiated on local node
[2026-05-27T11:33:38.912658Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:39.077173Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:39.077859Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-05-27T11:33:39.080740Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-05-27T11:33:39.110138Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.026138Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.026775Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.029394Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0006] Task initiated on local node
[2026-05-27T11:33:40.058734Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.059071Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.059233Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.059539Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.059842Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.063971Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T11:33:40.065421Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T11:33:40.065853Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T11:33:40.092165Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.092237Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.092259Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.092473Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.093041Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.095492Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T11:33:40.096359Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T11:33:40.126200Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.126263Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.126432Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.128680Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T11:33:40.158442Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:42.227377Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T11:33:50.521360Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T11:33:50.521360Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] 
[2026-05-27T11:33:50.521360Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T11:33:50.521422Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] 
[2026-05-27T11:33:50.521436Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T11:33:50.521442Z] [nf-67186bc94cd72161a46085fe9ae2a4ba-61599-nbh8v] [637_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec