cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i HCC1395_BL.md.bam --read_filter QualCalFilter,table=HCC1395_BL.table,indel=false --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz HCC1395_BL.table.post --algo ReadWriter HCC1395_BL.recalibrated.bam
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:160000001, elapsed 0.1s, est remaining 2.1s, peak mem 356MB, user 0.3s, sys 2.6s, output queue size 15
progress 10% @chr2:75000001, elapsed 0.2s, est remaining 1.8s, peak mem 546MB, user 0.5s, sys 5.0s, output queue size 41
progress 15% @chr2:237000001, elapsed 0.3s, est remaining 1.6s, peak mem 635MB, user 0.7s, sys 7.4s, output queue size 20
progress 20% @chr3:154000001, elapsed 0.4s, est remaining 1.4s, peak mem 738MB, user 0.9s, sys 9.7s, output queue size 8
progress 25% @chr4:115000001, elapsed 0.4s, est remaining 1.3s, peak mem 812MB, user 1.2s, sys 12.0s, output queue size 15
progress 30% @chr5:86000001, elapsed 0.5s, est remaining 1.2s, peak mem 858MB, user 1.3s, sys 14.4s, output queue size 9
progress 35% @chr6:65000001, elapsed 0.6s, est remaining 1.1s, peak mem 962MB, user 1.6s, sys 16.8s, output queue size 19
progress 40% @chr7:50000001, elapsed 0.7s, est remaining 1.0s, peak mem 1046MB, user 1.8s, sys 19.1s, output queue size 11
progress 45% @chr8:57000001, elapsed 0.8s, est remaining 0.9s, peak mem 1182MB, user 2.1s, sys 21.4s, output queue size 1
progress 50% @chr9:77000001, elapsed 0.9s, est remaining 0.9s, peak mem 1272MB, user 2.3s, sys 23.7s, output queue size 14
progress 55% @chr10:78000001, elapsed 0.9s, est remaining 0.8s, peak mem 1296MB, user 2.5s, sys 26.0s, output queue size 17
progress 60% @chr11:121000001, elapsed 1.0s, est remaining 0.7s, peak mem 1365MB, user 2.8s, sys 28.3s, output queue size 21
progress 65% @chr13:15000001, elapsed 1.1s, est remaining 0.6s, peak mem 1395MB, user 3.0s, sys 30.6s, output queue size 4
progress 70% @chr14:61000001, elapsed 1.2s, est remaining 0.5s, peak mem 1424MB, user 3.1s, sys 33.0s, output queue size 6
progress 75% @chr16:16000001, elapsed 1.3s, est remaining 0.4s, peak mem 1487MB, user 3.4s, sys 35.4s, output queue size 9
progress 80% @chr18:1, elapsed 1.4s, est remaining 0.3s, peak mem 1506MB, user 3.6s, sys 37.7s, output queue size 17
progress 85% @chr20:23000001, elapsed 1.4s, est remaining 0.3s, peak mem 1518MB, user 3.7s, sys 40.2s, output queue size 11
progress 90% @chrX:44000001, elapsed 1.7s, est remaining 0.2s, peak mem 2799MB, user 6.1s, sys 41.6s, output queue size 114
progress 95% @chrY:45000001, elapsed 1.8s, est remaining 0.1s, peak mem 2813MB, user 7.7s, sys 42.1s, output queue size 276
progress 100% @chr21:41000001, elapsed 3.9s, est remaining 0.0s, peak mem 2843MB, user 19.8s, sys 43.2s, output queue size 3664
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal ReadWriter
license: sentieon:QualCal=31 sentieon:ReadWriter=31
input file size: 51394930
output file size: 71343278
reads: 1001089
contig: 3367 intervals 3217346917 bases
ReadQualCal::clearEPSVecOne: 8 calls 0.006 user 0.010 sys 0.024 real
ReadQualCal::delayed_init: 1 calls 0.002 user 0.000 sys 0.029 real
ReadQualCal::init: 1 calls 0.010 user 0.000 sys 0.006 real
advance: 3219322 calls 1.584 user 5.521 sys 6.934 real
done: 1 calls 0.318 user 0.254 sys 0.575 real
exec_no_coor: 1 calls 0.000 user 0.000 sys 0.000 real
execute: 1 calls 0.006 user 0.001 sys 3.924 real
fetch: 3219322 calls 0.385 user 5.171 sys 5.527 real
fetch_reads: 3219322 calls 0.396 user 5.137 sys 5.614 real
fetch_ref: 13103 calls 0.026 user 0.004 sys 0.052 real
fetch_vcf: 13103 calls 1.391 user 0.064 sys 1.370 real
idle: 2228 calls 1.186 user 0.305 sys 89.709 real
init: 1 calls 0.002 user 0.000 sys 0.035 real
update: 13298 calls 5.166 user 1.208 sys 7.320 real
write: 3219322 calls 7.286 user 4.950 sys 12.557 real
overall: 2982961152 mem 23.862 user 44.260 sys 5.439 real
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 --algo QualCal --plot --before HCC1395_BL.table --after HCC1395_BL.table.post HCC1395_BL.csv
This software is licensed to bgold@natera.com by Sentieon Inc.
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
ReadQualCal::init: 2 calls 0.030 user 0.000 sys 0.025 real
done: 1 calls 0.052 user 0.008 sys 0.054 real
idle: 61 calls 0.002 user 0.000 sys 31.313 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 83648512 mem 0.075 user 0.025 sys 1.050 real