File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4d/9fdd375d991dbb36c866d684fa68b9/.command.err
Size
60.0 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_1;chr9_110971973-110972217.bed)
Attempt

Content

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[2026-05-27T11:33:27.775371Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T11:33:27.786877Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T11:33:27.786926Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T11:33:27.786933Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T11:33:27.786938Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXoXyPnL'
[2026-05-27T11:33:27.786943Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T11:33:27.786949Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T11:33:27.786953Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T11:33:27.786958Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T11:33:27.786962Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T11:33:27.786968Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T11:33:27.786972Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T11:33:27.786977Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T11:33:27.786981Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T11:33:27.787535Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T11:33:27.787656Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T11:33:27.793708Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T11:33:27.794536Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T11:33:27.794723Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T11:33:27.794936Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T11:33:27.795233Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.795956Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.796053Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.796128Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.796248Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.796331Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.796860Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.797037Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.797201Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.798028Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.798414Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.800261Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.800964Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.801055Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T11:33:27.801490Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.801575Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.801695Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.801762Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.801876Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.801940Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.802145Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.802212Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.802322Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.802551Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.802925Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.802989Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.803438Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.803508Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.803619Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.803685Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.803796Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.803861Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.803982Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.804171Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.804571Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.804637Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.804746Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.804811Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.804922Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.804990Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.805100Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.805159Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.805269Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.805331Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.805452Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.805520Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.805811Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.806366Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.806660Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.806740Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.806859Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.806926Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.807045Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.807107Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.807339Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.807927Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.808097Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.808164Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.808314Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.808387Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.808502Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.808563Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.808675Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.808740Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.826183Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.826535Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.826608Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.826782Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.826855Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.826949Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.827018Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.827135Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.827207Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T11:33:27.827258Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T11:33:27.833218Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.833895Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.834201Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.834428Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.835038Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.835648Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.836379Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.837360Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.838529Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.845261Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-05-27T11:33:27.848432Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0003] Task initiated on local node
[2026-05-27T11:33:27.850977Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-05-27T11:33:27.851889Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0002] Task initiated on local node
[2026-05-27T11:33:27.855491Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0000] Task initiated on local node
[2026-05-27T11:33:27.857457Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-05-27T11:33:27.858032Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0007] Task initiated on local node
[2026-05-27T11:33:27.858548Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0004] Task initiated on local node
[2026-05-27T11:33:27.955731Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.955840Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.955874Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.956711Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.957200Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.957926Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.961187Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-05-27T11:33:27.962670Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-05-27T11:33:27.963693Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-05-27T11:33:28.023825Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.023918Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.024682Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.025002Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.029068Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0003] Task initiated on local node
[2026-05-27T11:33:28.030071Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0012] Task initiated on local node
[2026-05-27T11:33:28.089980Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.090844Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.094524Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-05-27T11:33:28.155729Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.156628Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.159491Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-05-27T11:33:28.271089Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.271872Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.275164Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-05-27T11:33:28.336545Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.337469Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.340726Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0005] Task initiated on local node
[2026-05-27T11:33:28.353688Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.354547Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.357254Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0000] Task initiated on local node
[2026-05-27T11:33:28.419108Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.420361Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.423527Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0002] Task initiated on local node
[2026-05-27T11:33:28.585401Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.586353Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.589413Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0007] Task initiated on local node
[2026-05-27T11:33:28.650655Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.651476Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.655033Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0000] Task initiated on local node
[2026-05-27T11:33:28.667761Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.668546Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.672110Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0004] Task initiated on local node
[2026-05-27T11:33:28.833624Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.834547Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.838091Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0004] Task initiated on local node
[2026-05-27T11:33:28.867986Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.868762Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.872078Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-05-27T11:33:28.876933Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.877585Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.880784Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0008] Task initiated on local node
[2026-05-27T11:33:29.042299Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.043078Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.046171Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-05-27T11:33:29.050844Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.051592Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.054672Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-05-27T11:33:29.115962Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.116048Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.116077Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.116779Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.117052Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.117314Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.121606Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0012] Task initiated on local node
[2026-05-27T11:33:29.122470Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-05-27T11:33:29.154394Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0005] Task initiated on local node
[2026-05-27T11:33:29.182561Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.182666Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.182704Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.183592Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.183948Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.184433Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.188525Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_008_chr9_0000] Task initiated on local node
[2026-05-27T11:33:29.190215Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-05-27T11:33:29.191199Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0001] Task initiated on local node
[2026-05-27T11:33:29.201354Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.202187Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.205108Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0013] Task initiated on local node
[2026-05-27T11:33:29.266425Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.266539Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.267445Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.267792Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.271364Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-05-27T11:33:29.272184Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-05-27T11:33:29.332498Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.332586Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.333395Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.333759Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.337467Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0002] Task initiated on local node
[2026-05-27T11:33:29.338856Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0010] Task initiated on local node
[2026-05-27T11:33:29.398365Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.399499Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.403068Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0011] Task initiated on local node
[2026-05-27T11:33:29.564634Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.565504Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.568795Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0004] Task initiated on local node
[2026-05-27T11:33:29.629738Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.630596Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.633637Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0003] Task initiated on local node
[2026-05-27T11:33:29.694962Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.695635Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.698804Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0000] Task initiated on local node
[2026-05-27T11:33:29.699454Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.700028Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.702578Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0001] Task initiated on local node
[2026-05-27T11:33:29.764213Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.764329Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.765064Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.765430Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.769619Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-05-27T11:33:29.769891Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0009] Task initiated on local node
[2026-05-27T11:33:29.830721Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.831374Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.834355Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-05-27T11:33:29.895544Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.896293Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.899895Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0001] Task initiated on local node
[2026-05-27T11:33:30.512690Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.513358Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.516508Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0010] Task initiated on local node
[2026-05-27T11:33:30.577669Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.578414Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.582012Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-05-27T11:33:30.643964Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.644592Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.647211Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-05-27T11:33:30.677824Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.679081Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.682127Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0002] Task initiated on local node
[2026-05-27T11:33:30.743740Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.744461Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.747693Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0008] Task initiated on local node
[2026-05-27T11:33:30.752637Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.753159Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.756272Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0006] Task initiated on local node
[2026-05-27T11:33:30.785272Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.785923Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.789433Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-05-27T11:33:30.850465Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.850572Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.851093Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.851449Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.854636Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-05-27T11:33:30.855843Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-05-27T11:33:30.915936Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.916088Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.916679Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.919868Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0011] Task initiated on local node
[2026-05-27T11:33:30.981446Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.997407Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.997929Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.001139Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0013] Task initiated on local node
[2026-05-27T11:33:31.062380Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.062490Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.062531Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.063060Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.063401Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.066753Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-05-27T11:33:31.067566Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0003] Task initiated on local node
[2026-05-27T11:33:31.127639Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.127764Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.743887Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.744375Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.747198Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0009] Task initiated on local node
[2026-05-27T11:33:31.808575Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.923207Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.923767Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.926551Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0001] Task initiated on local node
[2026-05-27T11:33:31.988044Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.503394Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.503978Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.507296Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0006] Task initiated on local node
[2026-05-27T11:33:32.568524Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.568926Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.569164Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.569676Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.570179Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.574341Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T11:33:32.575763Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T11:33:32.576601Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T11:33:32.604108Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.604370Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.604905Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.605259Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.605864Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.608640Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T11:33:32.609497Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T11:33:32.638157Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.639670Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.639981Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.642894Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T11:33:32.672060Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.437704Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T11:33:38.323168Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T11:33:38.323168Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] 
[2026-05-27T11:33:38.323168Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T11:33:38.323232Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] 
[2026-05-27T11:33:38.323241Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T11:33:38.323247Z] [nf-4d9fdd375d991dbb36c866d684fa68b9-0f064-2tnn4] [613_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec