File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9a/43cdd27d2f80a9f3177b661e282f28/.command.err
Size
85.8 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_2;chr4_22420786-22421189.bed)
Attempt

Content

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[2026-05-27T11:33:29.124754Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T11:33:29.125560Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T11:33:29.125573Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T11:33:29.125578Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T11:33:29.125582Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXJbdthS'
[2026-05-27T11:33:29.125586Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T11:33:29.125594Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T11:33:29.125598Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T11:33:29.125602Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T11:33:29.125606Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T11:33:29.125609Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T11:33:29.125613Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T11:33:29.125617Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T11:33:29.125621Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T11:33:29.126248Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T11:33:29.126391Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T11:33:29.132695Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T11:33:29.133402Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T11:33:29.133693Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T11:33:29.134217Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T11:33:29.134575Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.135071Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.135165Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.135239Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.135356Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.135423Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.135544Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.135608Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.135759Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.135912Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.136422Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.136584Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.136681Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.137114Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.137557Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.137818Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.138009Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.140219Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.140907Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.141212Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.141294Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.141466Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.141725Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T11:33:29.141815Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.142045Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.142418Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.142576Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.142643Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.142757Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.142826Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.142938Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.143030Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.143147Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.143211Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.143328Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.143394Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.143757Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.144092Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.144235Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.144302Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.144416Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.144477Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.144590Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.144657Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.144766Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.144828Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.144944Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.145079Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.145459Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.146026Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.146226Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.146344Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.146469Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.146535Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.146651Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.146721Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.146837Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.146943Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.147176Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.147706Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.148582Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.148709Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.148943Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.149041Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.149187Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.149293Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.149442Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.149663Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.150479Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.150567Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.150686Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.150752Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.150860Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.151062Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.152884Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.153561Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.153696Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.153769Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.153882Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.153947Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.154060Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.154122Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.154236Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.154298Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.154409Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.154479Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.154698Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.155454Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.155609Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.155680Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.155798Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.155866Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.155974Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.156037Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.156185Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.156250Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.169054Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.175808Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.176425Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.176612Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.176741Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.177813Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.177949Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.178460Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.179039Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.179401Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.179856Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.180389Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.181131Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.183246Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.183842Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0002] Task initiated on local node
[2026-05-27T11:33:29.184676Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.184838Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T11:33:29.185333Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T11:33:29.185800Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.188696Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.189797Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0013] Task initiated on local node
[2026-05-27T11:33:29.195516Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0014] Task initiated on local node
[2026-05-27T11:33:29.197790Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0011] Task initiated on local node
[2026-05-27T11:33:29.200456Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0000] Task initiated on local node
[2026-05-27T11:33:29.204856Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0005] Task initiated on local node
[2026-05-27T11:33:29.205127Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0008] Task initiated on local node
[2026-05-27T11:33:29.208184Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0005] Task initiated on local node
[2026-05-27T11:33:29.973257Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.975112Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.978745Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0012] Task initiated on local node
[2026-05-27T11:33:30.090155Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.092029Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.095738Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0007] Task initiated on local node
[2026-05-27T11:33:30.307253Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.309261Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.312948Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0003] Task initiated on local node
[2026-05-27T11:33:30.325885Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.327584Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.331763Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0009] Task initiated on local node
[2026-05-27T11:33:30.392215Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.393695Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.397251Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0009] Task initiated on local node
[2026-05-27T11:33:30.558722Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.560177Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.564387Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0006] Task initiated on local node
[2026-05-27T11:33:30.676027Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.678134Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.681965Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0008] Task initiated on local node
[2026-05-27T11:33:31.344863Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.346492Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.349617Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0000] Task initiated on local node
[2026-05-27T11:33:31.410780Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.412128Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.415576Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0005] Task initiated on local node
[2026-05-27T11:33:31.476723Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.478593Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.482114Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0006] Task initiated on local node
[2026-05-27T11:33:31.643428Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.644822Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.648366Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0013] Task initiated on local node
[2026-05-27T11:33:31.661253Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.662270Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.665456Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0002] Task initiated on local node
[2026-05-27T11:33:31.726873Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.727946Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.731216Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0012] Task initiated on local node
[2026-05-27T11:33:31.743934Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.744996Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.748264Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0009] Task initiated on local node
[2026-05-27T11:33:31.777373Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.778842Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.779373Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.782441Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.782901Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0015] Task initiated on local node
[2026-05-27T11:33:31.785623Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0010] Task initiated on local node
[2026-05-27T11:33:32.047389Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.048480Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.051955Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0003] Task initiated on local node
[2026-05-27T11:33:32.113225Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.114337Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.117342Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0004] Task initiated on local node
[2026-05-27T11:33:32.178680Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.178778Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.179688Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.179998Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.182656Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0006] Task initiated on local node
[2026-05-27T11:33:32.185377Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0011] Task initiated on local node
[2026-05-27T11:33:32.214438Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.215869Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.219219Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0013] Task initiated on local node
[2026-05-27T11:33:32.280675Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.281806Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.284719Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0014] Task initiated on local node
[2026-05-27T11:33:32.346112Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.346224Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.347266Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.347610Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.350988Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0008] Task initiated on local node
[2026-05-27T11:33:32.352143Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0005] Task initiated on local node
[2026-05-27T11:33:32.412545Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.413680Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.416963Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0007] Task initiated on local node
[2026-05-27T11:33:32.478314Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.479418Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.483335Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0007] Task initiated on local node
[2026-05-27T11:33:32.745385Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.745533Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.746467Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.746858Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.750176Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0009] Task initiated on local node
[2026-05-27T11:33:32.751675Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0010] Task initiated on local node
[2026-05-27T11:33:32.811632Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.812702Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.815566Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0002] Task initiated on local node
[2026-05-27T11:33:33.428768Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.429739Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.433104Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0002] Task initiated on local node
[2026-05-27T11:33:33.462520Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.463556Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.466645Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0012] Task initiated on local node
[2026-05-27T11:33:33.480027Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.480932Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.484000Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0006] Task initiated on local node
[2026-05-27T11:33:33.512979Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.513958Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.516859Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0001] Task initiated on local node
[2026-05-27T11:33:33.678501Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.679434Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.682336Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0013] Task initiated on local node
[2026-05-27T11:33:33.743891Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.743999Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.744882Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.745236Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.748949Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0004] Task initiated on local node
[2026-05-27T11:33:33.749568Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0004] Task initiated on local node
[2026-05-27T11:33:33.810153Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.810271Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.811124Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.812954Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.814140Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0015] Task initiated on local node
[2026-05-27T11:33:33.817072Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0011] Task initiated on local node
[2026-05-27T11:33:33.845189Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.846166Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.849512Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0001] Task initiated on local node
[2026-05-27T11:33:33.862355Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.863241Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.866248Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0003] Task initiated on local node
[2026-05-27T11:33:34.028013Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.029047Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.031976Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0001] Task initiated on local node
[2026-05-27T11:33:34.045354Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.046277Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.049166Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0002] Task initiated on local node
[2026-05-27T11:33:34.062221Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.063092Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.065967Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0011] Task initiated on local node
[2026-05-27T11:33:34.095181Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.096097Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.099032Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0005] Task initiated on local node
[2026-05-27T11:33:34.099790Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.100556Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.103496Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0012] Task initiated on local node
[2026-05-27T11:33:34.132910Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.133704Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.136436Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0010] Task initiated on local node
[2026-05-27T11:33:34.165730Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.166902Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.167133Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.169949Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.171465Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0006] Task initiated on local node
[2026-05-27T11:33:34.172840Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0008] Task initiated on local node
[2026-05-27T11:33:34.234690Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.235575Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.238914Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0015] Task initiated on local node
[2026-05-27T11:33:34.500718Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.501542Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.504437Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0002] Task initiated on local node
[2026-05-27T11:33:34.517845Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.518812Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.521438Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0004] Task initiated on local node
[2026-05-27T11:33:34.534661Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.535462Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.538311Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0005] Task initiated on local node
[2026-05-27T11:33:34.551413Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.552199Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.555062Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0001] Task initiated on local node
[2026-05-27T11:33:34.568534Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.569318Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.572477Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0000] Task initiated on local node
[2026-05-27T11:33:35.084905Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.085712Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.088601Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0008] Task initiated on local node
[2026-05-27T11:33:35.250195Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.250899Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.253897Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0007] Task initiated on local node
[2026-05-27T11:33:35.282987Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.283064Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.283724Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.283944Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.287027Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0007] Task initiated on local node
[2026-05-27T11:33:35.288194Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0000] Task initiated on local node
[2026-05-27T11:33:35.349491Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.350223Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.352875Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0010] Task initiated on local node
[2026-05-27T11:33:35.382457Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.383195Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.385904Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0013] Task initiated on local node
[2026-05-27T11:33:35.415616Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.416304Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.418843Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0011] Task initiated on local node
[2026-05-27T11:33:35.448296Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.449378Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.449616Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.451917Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.452426Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0010] Task initiated on local node
[2026-05-27T11:33:35.455230Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0001] Task initiated on local node
[2026-05-27T11:33:35.484493Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.485185Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.487649Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0012] Task initiated on local node
[2026-05-27T11:33:35.517134Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.517843Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.520589Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0015] Task initiated on local node
[2026-05-27T11:33:35.549981Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.550649Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.553399Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0009] Task initiated on local node
[2026-05-27T11:33:35.765223Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.765322Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.765346Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.765995Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.766414Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.766796Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.769375Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0000] Task initiated on local node
[2026-05-27T11:33:35.771785Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0014] Task initiated on local node
[2026-05-27T11:33:35.773059Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0014] Task initiated on local node
[2026-05-27T11:33:35.801102Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.801181Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.801770Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.802030Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.804783Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0012] Task initiated on local node
[2026-05-27T11:33:35.833280Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0006] Task initiated on local node
[2026-05-27T11:33:35.834692Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.834764Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.834794Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.835311Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.835592Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.835925Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.839337Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0014] Task initiated on local node
[2026-05-27T11:33:35.839648Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0013] Task initiated on local node
[2026-05-27T11:33:35.840575Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0011] Task initiated on local node
[2026-05-27T11:33:35.869958Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.870043Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.870834Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.871152Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.871529Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.875138Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.876707Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_003_chr4_0000] Task initiated on local node
[2026-05-27T11:33:35.876929Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0004] Task initiated on local node
[2026-05-27T11:33:35.877784Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0001] Task initiated on local node
[2026-05-27T11:33:35.907290Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.907837Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.910404Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0003] Task initiated on local node
[2026-05-27T11:33:35.923568Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.924082Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.926459Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0000] Task initiated on local node
[2026-05-27T11:33:35.927912Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.928452Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.931005Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0003] Task initiated on local node
[2026-05-27T11:33:35.960895Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.960980Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.961480Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.963859Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0008] Task initiated on local node
[2026-05-27T11:33:35.994395Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.359444Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.359994Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.362621Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0007] Task initiated on local node
[2026-05-27T11:33:36.375925Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.376431Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.378920Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0010] Task initiated on local node
[2026-05-27T11:33:36.392139Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.407951Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.408021Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.408483Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.410819Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0009] Task initiated on local node
[2026-05-27T11:33:36.440293Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.504385Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.504822Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.507333Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0014] Task initiated on local node
[2026-05-27T11:33:36.537039Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.851672Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.852176Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.854547Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0004] Task initiated on local node
[2026-05-27T11:33:36.884061Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.998297Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.998721Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.001106Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0003] Task initiated on local node
[2026-05-27T11:33:37.030647Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.030918Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.031036Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.031499Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.031722Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.035515Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T11:33:37.036692Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T11:33:37.037741Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T11:33:37.064125Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.064191Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.064212Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.064397Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.064904Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.067290Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T11:33:37.067922Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T11:33:37.097224Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.097295Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.097489Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.099851Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T11:33:37.129586Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:39.749875Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T11:33:48.014105Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T11:33:48.014105Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] 
[2026-05-27T11:33:48.014105Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T11:33:48.014168Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] 
[2026-05-27T11:33:48.014177Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T11:33:48.014183Z] [nf-9a43cdd27d2f80a9f3177b661e282f28-bd69e-hjm6s] [590_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec