cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Sig_18_tissue.md.bam --read_filter QualCalFilter,table=Sig_18_tissue.table,indel=false --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz Sig_18_tissue.table.post --algo ReadWriter Sig_18_tissue.recalibrated.bam
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:139000001, elapsed 0.1s, est remaining 2.1s, peak mem 439MB, user 0.2s, sys 2.5s, output queue size 22
progress 10% @chr2:76000001, elapsed 0.2s, est remaining 1.8s, peak mem 787MB, user 0.5s, sys 4.8s, output queue size 41
progress 15% @chr2:210000001, elapsed 0.3s, est remaining 1.6s, peak mem 1022MB, user 0.8s, sys 7.3s, output queue size 25
progress 20% @chr3:135000001, elapsed 0.4s, est remaining 1.5s, peak mem 1195MB, user 1.0s, sys 9.6s, output queue size 18
progress 25% @chr4:117000001, elapsed 0.4s, est remaining 1.3s, peak mem 1364MB, user 1.2s, sys 11.9s, output queue size 17
progress 30% @chr5:89000001, elapsed 0.5s, est remaining 1.2s, peak mem 1561MB, user 1.6s, sys 14.1s, output queue size 13
progress 35% @chr6:66000001, elapsed 0.6s, est remaining 1.1s, peak mem 1655MB, user 1.8s, sys 16.5s, output queue size 17
progress 40% @chr7:30000001, elapsed 0.7s, est remaining 1.0s, peak mem 1759MB, user 2.0s, sys 18.8s, output queue size 25
progress 45% @chr8:60000001, elapsed 0.8s, est remaining 0.9s, peak mem 1903MB, user 2.3s, sys 21.1s, output queue size 13
progress 50% @chr9:53000001, elapsed 0.9s, est remaining 0.9s, peak mem 1976MB, user 2.4s, sys 23.5s, output queue size 20
progress 55% @chr10:95000001, elapsed 0.9s, est remaining 0.8s, peak mem 2021MB, user 2.7s, sys 25.8s, output queue size 20
progress 60% @chr11:124000001, elapsed 1.0s, est remaining 0.7s, peak mem 2087MB, user 2.9s, sys 28.0s, output queue size 20
progress 65% @chr13:15000001, elapsed 1.1s, est remaining 0.6s, peak mem 2140MB, user 3.1s, sys 30.3s, output queue size 3
progress 70% @chr14:62000001, elapsed 1.2s, est remaining 0.5s, peak mem 2234MB, user 3.4s, sys 32.6s, output queue size 12
progress 75% @chr16:15000001, elapsed 1.3s, est remaining 0.4s, peak mem 2282MB, user 3.6s, sys 35.0s, output queue size 6
progress 80% @chr18:3000001, elapsed 1.4s, est remaining 0.3s, peak mem 2317MB, user 3.8s, sys 37.3s, output queue size 18
progress 85% @chr20:22000001, elapsed 1.4s, est remaining 0.3s, peak mem 2366MB, user 4.0s, sys 39.7s, output queue size 20
progress 90% @chrX:43000001, elapsed 1.8s, est remaining 0.2s, peak mem 2806MB, user 7.5s, sys 40.6s, output queue size 114
progress 95% @chr21:40000001, elapsed 1.9s, est remaining 0.1s, peak mem 2818MB, user 8.9s, sys 40.8s, output queue size 276
progress 100% @chr21:41000001, elapsed 5.7s, est remaining 0.0s, peak mem 2842MB, user 27.8s, sys 41.5s, output queue size 3664
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal ReadWriter
license: sentieon:QualCal=31 sentieon:ReadWriter=31
input file size: 50044781
output file size: 93136294
reads: 1001838
contig: 3367 intervals 3217346917 bases
ReadQualCal::clearEPSVecOne: 8 calls 0.000 user 0.000 sys 0.024 real
ReadQualCal::delayed_init: 1 calls 0.004 user 0.001 sys 0.022 real
ReadQualCal::init: 1 calls 0.000 user 0.000 sys 0.006 real
advance: 3219322 calls 1.522 user 4.726 sys 6.738 real
done: 1 calls 0.327 user 0.476 sys 0.806 real
exec_no_coor: 1 calls 0.000 user 0.000 sys 0.000 real
execute: 1 calls 0.004 user 0.000 sys 5.735 real
fetch: 3219323 calls 0.328 user 4.964 sys 5.411 real
fetch_reads: 3219322 calls 0.407 user 4.689 sys 5.506 real
fetch_ref: 13004 calls 0.030 user 0.015 sys 0.051 real
fetch_vcf: 13004 calls 1.732 user 0.056 sys 1.607 real
idle: 2331 calls 2.185 user 0.308 sys 157.000 real
init: 1 calls 0.008 user 0.001 sys 0.028 real
update: 13229 calls 7.301 user 0.983 sys 9.063 real
write: 3219323 calls 12.679 user 4.630 sys 17.923 real
overall: 2980216832 mem 34.969 user 42.599 sys 7.912 real
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 --algo QualCal --plot --before Sig_18_tissue.table --after Sig_18_tissue.table.post Sig_18_tissue.csv
This software is licensed to bgold@natera.com by Sentieon Inc.
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
ReadQualCal::init: 2 calls 0.026 user 0.004 sys 0.028 real
done: 1 calls 0.045 user 0.014 sys 0.059 real
idle: 61 calls 0.002 user 0.000 sys 31.340 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 83664896 mem 0.063 user 0.045 sys 1.055 real