Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/ae8c113b06148ec286219c787e45d4/.command.sh
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr4_22420786-22421189.bed.gz.tbi
Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/25/42f5334e31345bae82309fbb4f085c/HCC1395_BL.recalibrated.bam
Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr4_22420786-22421189.bed.gz
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/25/42f5334e31345bae82309fbb4f085c/HCC1395_BL.recalibrated.bam.bai
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/ae8c113b06148ec286219c787e45d4/.command.run
==> STAGING COMPLETE (10 inputs)
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXYJcEwL/chr4_22420786-22421189.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXYJcEwL/chr4_22420786-22421189.bed.gz.tbi
Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:
/var/tmp/strelka/runWorkflow.py
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXYJcEwL/chr4_22420786-22421189.bed.gz.tbi
[2026-05-27T11:33:39.331049Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T11:33:39.331758Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T11:33:39.331769Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T11:33:39.331774Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T11:33:39.331778Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXYJcEwL'
[2026-05-27T11:33:39.331782Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T11:33:39.331788Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T11:33:39.331792Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T11:33:39.331795Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T11:33:39.331799Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T11:33:39.331802Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T11:33:39.331806Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T11:33:39.331809Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T11:33:39.331813Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T11:33:39.332235Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T11:33:39.332336Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T11:33:39.338005Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T11:33:39.338856Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T11:33:39.339102Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T11:33:39.339303Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T11:33:39.339540Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.340051Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.340185Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.340262Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.340385Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.340455Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.340580Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.340769Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.341080Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.341386Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.341575Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.341740Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T11:33:39.341868Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.342748Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.342933Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.343147Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.343254Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.343475Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.345046Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.345338Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T11:33:39.345940Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.346013Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.346128Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.346196Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.346306Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.346371Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.346494Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.346557Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.346667Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.346732Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.347065Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.347340Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.347453Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.347538Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.347651Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.347719Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.347830Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.347931Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.348046Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.348127Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.348242Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.348303Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.348548Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.348931Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.349040Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.349103Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.349216Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.349279Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.349445Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.349512Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.349621Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.349689Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.349800Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.349890Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.350076Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.350226Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.350766Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.350829Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.350935Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.350997Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.351107Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.351165Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.351276Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.351340Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.351445Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.351512Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.351621Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.351681Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.351987Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.352596Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.352791Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.352867Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.352987Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.353071Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.354418Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.354612Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.355313Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.355902Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.356020Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.356103Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.356221Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.356285Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.356432Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.356493Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.356604Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.356672Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.356784Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.356858Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.357195Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.357763Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.357880Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.357951Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.358058Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.358121Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.358233Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.358316Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.375902Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.376515Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.376685Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:39.376861Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.377797Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:39.377969Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.378072Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.378434Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.378765Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.378923Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:39.379592Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-05-27T11:33:39.379886Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.380600Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-05-27T11:33:39.381001Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T11:33:39.381433Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-05-27T11:33:39.381638Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T11:33:39.382239Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-05-27T11:33:39.383020Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-05-27T11:33:39.383743Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:39.387289Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0004] Task initiated on local node
[2026-05-27T11:33:39.391522Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0002] Task initiated on local node
[2026-05-27T11:33:39.394181Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0007] Task initiated on local node
[2026-05-27T11:33:39.396693Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0013] Task initiated on local node
[2026-05-27T11:33:39.401098Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0011] Task initiated on local node
[2026-05-27T11:33:39.403535Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0015] Task initiated on local node
[2026-05-27T11:33:39.403846Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0005] Task initiated on local node
[2026-05-27T11:33:39.406219Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0006] Task initiated on local node
[2026-05-27T11:33:40.572466Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.573531Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.576553Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0009] Task initiated on local node
[2026-05-27T11:33:40.738153Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.738270Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.739374Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.740042Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.743420Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0014] Task initiated on local node
[2026-05-27T11:33:40.744390Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0012] Task initiated on local node
[2026-05-27T11:33:40.773018Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.774166Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.777179Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0008] Task initiated on local node
[2026-05-27T11:33:41.039256Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:41.040563Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-05-27T11:33:41.044131Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0013] Task initiated on local node
[2026-05-27T11:33:41.355978Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:41.356107Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:41.357198Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:41.357509Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-05-27T11:33:41.360839Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0011] Task initiated on local node
[2026-05-27T11:33:41.362221Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0001] Task initiated on local node
[2026-05-27T11:33:41.422623Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:41.423702Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-05-27T11:33:41.426668Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0012] Task initiated on local node
[2026-05-27T11:33:41.455731Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:41.456742Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-05-27T11:33:41.460296Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0015] Task initiated on local node
[2026-05-27T11:33:41.461052Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:41.462033Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:41.465111Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0001] Task initiated on local node
[2026-05-27T11:33:41.494393Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:41.495487Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-05-27T11:33:41.498622Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0014] Task initiated on local node
[2026-05-27T11:33:41.527667Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:41.528870Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:41.532607Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0005] Task initiated on local node
[2026-05-27T11:33:41.561548Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:41.563056Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:41.566230Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0001] Task initiated on local node
[2026-05-27T11:33:41.627390Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:41.628582Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:41.632219Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0000] Task initiated on local node
[2026-05-27T11:33:41.693373Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:41.694521Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-05-27T11:33:41.698339Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0011] Task initiated on local node
[2026-05-27T11:33:41.809381Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:41.810599Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-05-27T11:33:41.814005Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0008] Task initiated on local node
[2026-05-27T11:33:41.842944Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:41.843048Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:41.844056Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:41.844873Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-05-27T11:33:41.848063Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:41.849779Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0002] Task initiated on local node
[2026-05-27T11:33:41.851546Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-05-27T11:33:41.851765Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0009] Task initiated on local node
[2026-05-27T11:33:41.854782Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0010] Task initiated on local node
[2026-05-27T11:33:42.217412Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:42.218994Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:42.222057Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0005] Task initiated on local node
[2026-05-27T11:33:42.283297Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:42.283414Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:42.284722Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:42.285373Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:42.288893Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0001] Task initiated on local node
[2026-05-27T11:33:42.289701Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0000] Task initiated on local node
[2026-05-27T11:33:42.350128Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:42.350254Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:42.351954Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:42.352476Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:42.355993Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_003_chr4_0000] Task initiated on local node
[2026-05-27T11:33:42.357203Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0004] Task initiated on local node
[2026-05-27T11:33:42.417061Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:42.417158Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:42.418183Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:42.418524Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-05-27T11:33:42.422222Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0009] Task initiated on local node
[2026-05-27T11:33:42.423440Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0000] Task initiated on local node
[2026-05-27T11:33:42.483289Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:42.484330Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-05-27T11:33:42.487931Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0014] Task initiated on local node
[2026-05-27T11:33:42.549129Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:42.550224Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-05-27T11:33:42.553549Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0011] Task initiated on local node
[2026-05-27T11:33:42.558320Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:42.559841Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:42.562884Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0002] Task initiated on local node
[2026-05-27T11:33:42.592119Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:42.592223Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:42.593448Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:42.593936Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-05-27T11:33:42.598078Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0006] Task initiated on local node
[2026-05-27T11:33:42.598317Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0004] Task initiated on local node
[2026-05-27T11:33:42.859491Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:42.860871Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:42.864342Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0005] Task initiated on local node
[2026-05-27T11:33:42.925072Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:42.925173Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:42.925209Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:42.926275Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-05-27T11:33:42.926591Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-05-27T11:33:42.926837Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-05-27T11:33:42.930360Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0013] Task initiated on local node
[2026-05-27T11:33:42.931544Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0010] Task initiated on local node
[2026-05-27T11:33:42.932729Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0014] Task initiated on local node
[2026-05-27T11:33:42.992578Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:42.992693Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:42.992719Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:42.993741Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-05-27T11:33:42.994317Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:42.994576Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:42.998293Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0007] Task initiated on local node
[2026-05-27T11:33:42.999915Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0002] Task initiated on local node
[2026-05-27T11:33:43.000992Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0003] Task initiated on local node
[2026-05-27T11:33:43.059269Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:43.060565Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-05-27T11:33:43.063793Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0012] Task initiated on local node
[2026-05-27T11:33:43.626118Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:43.627396Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-05-27T11:33:43.630498Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0012] Task initiated on local node
[2026-05-27T11:33:43.691888Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:43.691998Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:43.693116Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-05-27T11:33:43.693663Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-05-27T11:33:43.696774Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0009] Task initiated on local node
[2026-05-27T11:33:43.698006Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0013] Task initiated on local node
[2026-05-27T11:33:43.758238Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:43.758355Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:43.759598Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-05-27T11:33:43.760228Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:43.763629Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0008] Task initiated on local node
[2026-05-27T11:33:43.764764Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0001] Task initiated on local node
[2026-05-27T11:33:43.874934Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:43.876526Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:43.879627Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0000] Task initiated on local node
[2026-05-27T11:33:43.940935Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:43.942154Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-05-27T11:33:43.945287Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0009] Task initiated on local node
[2026-05-27T11:33:44.107001Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:44.107882Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:44.110889Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0000] Task initiated on local node
[2026-05-27T11:33:44.171990Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:44.173118Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-05-27T11:33:44.176276Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0015] Task initiated on local node
[2026-05-27T11:33:44.287449Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:44.288488Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-05-27T11:33:44.292061Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0011] Task initiated on local node
[2026-05-27T11:33:44.603872Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:44.604719Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:44.607584Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0000] Task initiated on local node
[2026-05-27T11:33:44.669194Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:44.670193Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:44.672975Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0004] Task initiated on local node
[2026-05-27T11:33:44.734532Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:44.735458Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:44.738514Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0003] Task initiated on local node
[2026-05-27T11:33:44.850120Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:44.850985Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:44.854258Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0004] Task initiated on local node
[2026-05-27T11:33:45.015549Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:45.016392Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-05-27T11:33:45.019786Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0010] Task initiated on local node
[2026-05-27T11:33:45.048824Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:45.049711Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-05-27T11:33:45.052564Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0015] Task initiated on local node
[2026-05-27T11:33:45.113981Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:45.114891Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-05-27T11:33:45.118736Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0007] Task initiated on local node
[2026-05-27T11:33:45.179781Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:45.180761Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-05-27T11:33:45.184231Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0009] Task initiated on local node
[2026-05-27T11:33:45.245370Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:45.246250Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-05-27T11:33:45.249399Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0010] Task initiated on local node
[2026-05-27T11:33:45.278483Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:45.279331Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:45.282386Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0002] Task initiated on local node
[2026-05-27T11:33:45.343491Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:45.344327Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-05-27T11:33:45.347736Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0006] Task initiated on local node
[2026-05-27T11:33:45.609531Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:45.610437Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:45.613437Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0005] Task initiated on local node
[2026-05-27T11:33:45.674702Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:45.675449Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:45.678641Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0002] Task initiated on local node
[2026-05-27T11:33:45.740011Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:45.740823Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-05-27T11:33:45.743694Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0006] Task initiated on local node
[2026-05-27T11:33:45.805047Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:45.805909Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-05-27T11:33:45.809102Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0014] Task initiated on local node
[2026-05-27T11:33:45.870323Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:45.871039Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-05-27T11:33:45.873936Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0006] Task initiated on local node
[2026-05-27T11:33:45.935386Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:45.936150Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-05-27T11:33:45.939076Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0007] Task initiated on local node
[2026-05-27T11:33:45.944175Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:45.944863Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-05-27T11:33:45.947602Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0011] Task initiated on local node
[2026-05-27T11:33:46.008998Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:46.009748Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:46.013331Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0003] Task initiated on local node
[2026-05-27T11:33:46.324994Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:46.325744Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-05-27T11:33:46.328492Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0010] Task initiated on local node
[2026-05-27T11:33:46.390111Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:46.390201Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:46.390874Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-05-27T11:33:46.391123Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:46.394696Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0001] Task initiated on local node
[2026-05-27T11:33:46.395609Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0008] Task initiated on local node
[2026-05-27T11:33:46.423523Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:46.424292Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:46.427239Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0004] Task initiated on local node
[2026-05-27T11:33:46.488469Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:46.489195Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-05-27T11:33:46.492299Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0012] Task initiated on local node
[2026-05-27T11:33:46.521543Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:46.522365Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-05-27T11:33:46.522886Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:46.525140Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-05-27T11:33:46.525592Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0007] Task initiated on local node
[2026-05-27T11:33:46.528302Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0010] Task initiated on local node
[2026-05-27T11:33:46.557244Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:46.557351Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:46.557935Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:46.558381Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-05-27T11:33:46.561550Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0003] Task initiated on local node
[2026-05-27T11:33:46.562691Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0014] Task initiated on local node
[2026-05-27T11:33:46.623107Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:46.623214Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:46.623807Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-05-27T11:33:46.624158Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-05-27T11:33:46.627070Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0008] Task initiated on local node
[2026-05-27T11:33:46.628056Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0012] Task initiated on local node
[2026-05-27T11:33:46.657777Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:46.657867Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:46.657898Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:46.658461Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-05-27T11:33:46.658722Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:46.662076Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0005] Task initiated on local node
[2026-05-27T11:33:46.663126Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0013] Task initiated on local node
[2026-05-27T11:33:46.690806Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:46.722981Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:46.723538Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-05-27T11:33:46.726147Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0013] Task initiated on local node
[2026-05-27T11:33:46.787880Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:47.002674Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:47.003236Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-05-27T11:33:47.005904Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0006] Task initiated on local node
[2026-05-27T11:33:47.035523Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:47.036352Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-05-27T11:33:47.036620Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:47.039060Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0007] Task initiated on local node
[2026-05-27T11:33:47.069940Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:47.134038Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:47.134591Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-05-27T11:33:47.137452Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0008] Task initiated on local node
[2026-05-27T11:33:47.166721Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:47.230946Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:47.231472Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:47.233898Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0003] Task initiated on local node
[2026-05-27T11:33:47.263478Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:47.478186Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:47.478686Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:47.481535Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0003] Task initiated on local node
[2026-05-27T11:33:47.510848Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:47.511141Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:47.511281Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T11:33:47.511533Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T11:33:47.511846Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T11:33:47.516090Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T11:33:47.517330Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T11:33:47.518228Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T11:33:47.544771Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:47.544838Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:47.544863Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:47.545076Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T11:33:47.545375Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T11:33:47.547965Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T11:33:47.548564Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T11:33:47.577700Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:47.577768Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:47.577949Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T11:33:47.580329Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T11:33:47.609738Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:49.979526Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T11:33:58.220547Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T11:33:58.220547Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner]
[2026-05-27T11:33:58.220547Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] workflow version: 2.9.10
[2026-05-27T11:33:58.220605Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner]
[2026-05-27T11:33:58.220611Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T11:33:58.220618Z] [nf-cbae8c113b06148ec286219c787e45d4-eefd5-2gjlg] [619_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec