File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/7f7cc8f28476ef1a267d9f402cfe16/.command.err
Size
60.0 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_2;chr9_110971973-110972217.bed)
Attempt

Content

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[2026-05-27T11:33:30.239703Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T11:33:30.241045Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T11:33:30.241061Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T11:33:30.241065Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T11:33:30.241070Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXT8Q9Zx'
[2026-05-27T11:33:30.241074Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T11:33:30.241080Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T11:33:30.241083Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T11:33:30.241087Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T11:33:30.241091Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T11:33:30.241095Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T11:33:30.241099Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T11:33:30.241102Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T11:33:30.241106Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T11:33:30.241707Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T11:33:30.241829Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T11:33:30.247843Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T11:33:30.248873Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T11:33:30.249004Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T11:33:30.249413Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T11:33:30.249660Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T11:33:30.250546Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:30.250651Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:30.250727Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:30.250854Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:30.251010Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:30.251481Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:30.251597Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.251871Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:30.252020Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:30.252302Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:30.252954Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:30.255130Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:30.255919Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:30.255976Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T11:33:30.256395Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:30.256524Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-05-27T11:33:30.256590Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-05-27T11:33:30.256957Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-05-27T11:33:30.257137Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-05-27T11:33:30.257384Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-05-27T11:33:30.257490Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-05-27T11:33:30.257602Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-05-27T11:33:30.257671Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-05-27T11:33:30.257782Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-05-27T11:33:30.257843Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-05-27T11:33:30.258431Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-05-27T11:33:30.258751Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-05-27T11:33:30.258863Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:30.258930Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:30.259042Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:30.259110Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:30.259219Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:30.259280Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:30.259403Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:30.259469Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:30.259579Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:30.259644Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:30.259754Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:30.259837Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:30.259986Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-05-27T11:33:30.260131Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-05-27T11:33:30.260658Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-05-27T11:33:30.260726Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-05-27T11:33:30.260833Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-05-27T11:33:30.260899Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-05-27T11:33:30.261010Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-05-27T11:33:30.261131Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-05-27T11:33:30.261249Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-05-27T11:33:30.261314Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-05-27T11:33:30.261422Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-05-27T11:33:30.261489Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-05-27T11:33:30.261606Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-05-27T11:33:30.261727Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-05-27T11:33:30.262298Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-05-27T11:33:30.262363Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-05-27T11:33:30.262472Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:30.262536Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:30.262650Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:30.262716Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:30.262826Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:30.262887Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:30.262995Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:30.263061Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:30.278098Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:30.278234Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:30.278312Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T11:33:30.278484Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T11:33:30.278561Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T11:33:30.278647Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T11:33:30.278719Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T11:33:30.278831Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T11:33:30.278903Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T11:33:30.278956Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T11:33:30.288775Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.291166Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.291434Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.291619Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.292582Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.293266Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.294047Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.295660Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.297049Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.300765Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0000] Task initiated on local node
[2026-05-27T11:33:30.304183Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0012] Task initiated on local node
[2026-05-27T11:33:30.306483Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0004] Task initiated on local node
[2026-05-27T11:33:30.309905Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0001] Task initiated on local node
[2026-05-27T11:33:30.311427Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-05-27T11:33:30.315150Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0006] Task initiated on local node
[2026-05-27T11:33:30.315994Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-05-27T11:33:30.414054Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.414164Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.415035Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.415837Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.420226Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-05-27T11:33:30.421844Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-05-27T11:33:30.481941Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.482960Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.486069Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0005] Task initiated on local node
[2026-05-27T11:33:30.491053Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.491834Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.494522Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0002] Task initiated on local node
[2026-05-27T11:33:30.756638Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.757533Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.760895Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-05-27T11:33:30.822069Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.823381Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.826385Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0002] Task initiated on local node
[2026-05-27T11:33:30.833922Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0009] Task initiated on local node
[2026-05-27T11:33:30.839373Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.839489Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.840503Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.840846Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.844236Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0001] Task initiated on local node
[2026-05-27T11:33:30.845868Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0001] Task initiated on local node
[2026-05-27T11:33:30.873592Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.874822Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.878049Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-05-27T11:33:30.891094Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.892055Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.894966Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0011] Task initiated on local node
[2026-05-27T11:33:30.956374Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.957414Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.960615Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0004] Task initiated on local node
[2026-05-27T11:33:31.021766Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.022797Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.026299Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0005] Task initiated on local node
[2026-05-27T11:33:31.087357Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.087444Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.088327Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.088674Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.092763Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0000] Task initiated on local node
[2026-05-27T11:33:31.093460Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-05-27T11:33:31.204266Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.205441Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.208816Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0004] Task initiated on local node
[2026-05-27T11:33:31.269932Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.270813Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.274162Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0010] Task initiated on local node
[2026-05-27T11:33:31.435815Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.436712Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.440247Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0002] Task initiated on local node
[2026-05-27T11:33:32.002743Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.004053Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.007294Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-05-27T11:33:32.068724Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.069807Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.072686Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-05-27T11:33:32.085782Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.086689Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.089437Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0011] Task initiated on local node
[2026-05-27T11:33:32.102552Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.103664Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.106889Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0003] Task initiated on local node
[2026-05-27T11:33:32.120162Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.121171Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.124054Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-05-27T11:33:32.153175Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.154131Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.157134Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0008] Task initiated on local node
[2026-05-27T11:33:32.161975Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.162869Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.165938Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-05-27T11:33:32.170699Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.171542Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.174012Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0009] Task initiated on local node
[2026-05-27T11:33:32.235632Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.235756Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.236540Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.236941Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.240302Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0000] Task initiated on local node
[2026-05-27T11:33:32.241510Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0000] Task initiated on local node
[2026-05-27T11:33:32.302671Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.302791Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.303988Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.304417Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.307681Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-05-27T11:33:32.309038Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-05-27T11:33:32.312701Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.313429Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.315914Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0003] Task initiated on local node
[2026-05-27T11:33:32.427691Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.427806Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.428635Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.429051Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.432408Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0003] Task initiated on local node
[2026-05-27T11:33:32.433505Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0013] Task initiated on local node
[2026-05-27T11:33:32.493766Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.493865Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.494867Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.495282Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.498184Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0010] Task initiated on local node
[2026-05-27T11:33:32.499482Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0008] Task initiated on local node
[2026-05-27T11:33:32.559493Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.559580Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.559615Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.560337Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.560695Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.560936Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.564387Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-05-27T11:33:32.565361Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0006] Task initiated on local node
[2026-05-27T11:33:32.566546Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0002] Task initiated on local node
[2026-05-27T11:33:32.594584Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.595976Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.596387Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.597471Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.598074Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.601187Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.602975Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-05-27T11:33:32.603411Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0004] Task initiated on local node
[2026-05-27T11:33:32.605855Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0007] Task initiated on local node
[2026-05-27T11:33:32.635136Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.636036Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.639135Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0012] Task initiated on local node
[2026-05-27T11:33:32.700344Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.701169Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.704008Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-05-27T11:33:32.733209Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.733955Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.737066Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_008_chr9_0000] Task initiated on local node
[2026-05-27T11:33:32.766017Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.766917Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.770082Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-05-27T11:33:32.799129Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.799847Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.802017Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.802903Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-05-27T11:33:32.803037Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.806148Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-05-27T11:33:32.867340Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.867437Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.868022Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.868578Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.871881Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-05-27T11:33:32.902384Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-05-27T11:33:32.933093Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.933192Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.933952Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.936760Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0001] Task initiated on local node
[2026-05-27T11:33:32.998046Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.112453Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.113206Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.116170Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-05-27T11:33:33.177362Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.342170Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.342286Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.342922Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.343369Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.346515Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0007] Task initiated on local node
[2026-05-27T11:33:33.347332Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0003] Task initiated on local node
[2026-05-27T11:33:33.407662Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.407757Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.973259Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.973814Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.977327Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0013] Task initiated on local node
[2026-05-27T11:33:34.038482Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.353708Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.354227Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.357223Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-05-27T11:33:34.418599Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.285026Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.285498Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.288161Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-05-27T11:33:35.317753Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.318045Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.318204Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.318706Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.319165Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.323013Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T11:33:35.324794Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T11:33:35.349653Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T11:33:35.352746Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.352810Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.352833Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.353078Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.353368Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.356212Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T11:33:35.356943Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T11:33:35.387121Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.387196Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.387418Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.390248Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T11:33:35.420774Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.885487Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T11:33:40.812099Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T11:33:40.812099Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] 
[2026-05-27T11:33:40.812099Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T11:33:40.812150Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] 
[2026-05-27T11:33:40.812156Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T11:33:40.812163Z] [nf-ae7f7cc8f28476ef1a267d9f402cfe16-d61da-8b4kw] [604_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec