Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/d87753f97c3f3eb1df8c1b837d7772/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/d87753f97c3f3eb1df8c1b837d7772/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4b/b66aba058a3c62f6e70309bde2f9ef/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/d87753f97c3f3eb1df8c1b837d7772/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/43/e643f36190b46e551447a691199a7e/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/43/e643f36190b46e551447a691199a7e/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-tfrgh496 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-05-27 11:38:37,810 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-05-27 11:38:38,642 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-05-27 11:38:38,816 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-05-27 11:38:39,818 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-05-27 11:38:40,011 - cnv_pipe.batch.run_model - INFO - Processing cluster 1027 with 165 probes
2026-05-27 11:38:40,403 - cnv_pipe.batch.run_model.cluster1027 - INFO - Child process started for cluster 1027 with 165 probes
2026-05-27 11:39:31,497 - cnv_pipe.batch.run_model.cluster1027 - INFO - Child process finished cluster 1027. Wrote cluster_1027_samples.csv and cluster_1027_params.csv
2026-05-27 11:39:31,498 - cnv_pipe.batch.run_model - INFO - Cluster 1027 finished in 51.49 seconds. Status: SUCCESS