File Info

Filename
negative_somatic_control_1.tnseq.orientation_data.tsv
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/ff5fb5be964ff9f728eb2e82f9217d/negative_somatic_control_1.tnseq.orientation_data.tsv
Size
8.7 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_TNSEQ:SENTIEON_TNHAPLOTYPER2 (negative_somatic_control_1)
Attempt

Content

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#<METADATA>SAMPLE=HCC1395_BL
context rev_comp f1r2_a f1r2_c f1r2_g f1r2_t f2r1_a f2r1_c f2r1_g f2r1_t hom_ref germline_het somatic_het hom_var num_examples num_alt_examples
AAA TTT 0 2.72158e-06 4.61258e-06 2.50791e-06 0 1.24864e-05 4.54669e-05 2.89598e-06 0.999179 0.000139712 0.000533319 7.76853e-05 39903 693
AAC GTT 0 5.71959e-06 0.000143816 5.34639e-06 0 5.50377e-06 0.00015286 5.35249e-06 0.999034 0.000106992 0.000268425 0.0002724 18720 383
AAG CTT 0 3.83646e-06 0.000185399 3.70039e-06 0 1.65438e-05 0.000166523 4.44689e-06 0.998547 0.000163322 0.000577625 0.000331143 27450 699
AAT ATT 0 4.62003e-06 0.000115491 4.22541e-06 0 4.57688e-06 1.04185e-05 4.23765e-06 0.999133 0.000130456 0.000336657 0.000256655 23706 460
ACA TGT 0.00103239 0 3.90118e-06 7.0436e-06 0.00232448 0 1.4176e-05 2.25406e-05 0.995638 8.08302e-05 0.000760416 0.000116004 26716 1204
ACC GGT 0.00066921 0 5.35233e-06 5.38736e-05 0.0012362 0 5.99206e-06 2.04279e-05 0.996407 0.000501763 0.000896287 0.000203481 20146 800
ACG CGT 0.0012727 0 1.16334e-05 6.20922e-05 0.00225877 0 1.32567e-05 0.000924772 0.988617 0.00401798 0.00143045 0.00139164 8668 617
ACT AGT 0.000928609 0 5.13994e-06 1.55928e-05 0.00178811 0 5.28653e-06 1.30194e-05 0.996154 0.000278366 0.000458345 0.000353934 20059 830
AGA TCT 2.54686e-05 4.18561e-06 0 0.000505012 5.62339e-06 3.46753e-06 0 0.000888406 0.997366 0.000126069 0.000701597 0.000374511 29448 915
AGC GCT 4.4088e-05 3.85578e-06 0 0.00215243 4.74755e-05 5.93729e-06 0 0.00180645 0.995061 4.58885e-05 0.000590432 0.00024283 26462 1270
AGG CCT 1.31687e-05 4.33919e-06 0 0.000595168 3.69123e-05 3.39831e-06 0 0.000720656 0.997591 0.00020699 0.000463993 0.000364376 30447 1220
AGT ACT 1.30194e-05 5.28653e-06 0 0.00178811 1.55928e-05 5.13994e-06 0 0.000928609 0.996154 0.000278366 0.000458345 0.000353934 20059 830
ATA TAT 5.67345e-06 2.13696e-05 6.20975e-06 0 5.6665e-06 6.25513e-05 0.000134189 0 0.998529 0.000750142 0.000255598 0.000229684 17701 418
ATC GAT 6.06443e-06 4.34067e-05 4.61267e-05 0 5.93698e-06 6.75433e-05 6.39435e-06 0 0.998461 8.13993e-05 0.000742848 0.000539735 16859 389
ATG CAT 9.33969e-06 1.49268e-05 6.21297e-06 0 5.72029e-06 5.12084e-06 4.79062e-06 0 0.99733 0.000389016 0.00131129 0.000923777 22839 568
ATT AAT 4.23765e-06 1.04185e-05 4.57688e-06 0 4.22541e-06 0.000115491 4.62003e-06 0 0.999133 0.000130456 0.000336657 0.000256655 23706 460
CAA TTG 0 4.68662e-06 7.60537e-06 4.44421e-06 0 5.2973e-06 5.48697e-06 5.9829e-06 0.999093 0.000444363 0.000202463 0.000226308 22534 470
CAC GTG 0 8.19293e-06 1.03894e-05 4.62166e-06 0 4.53265e-05 5.50473e-06 4.40954e-06 0.997233 0.000602193 0.0012727 0.000813475 25730 705
CAG CTG 0 2.80347e-06 0.00010025 2.73078e-06 0 2.954e-06 0.000122728 3.76246e-06 0.997816 0.000885418 0.000361004 0.000702513 38504 1242
CAT ATG 0 4.79062e-06 5.12084e-06 5.72029e-06 0 6.21297e-06 1.49268e-05 9.33969e-06 0.99733 0.000389016 0.00131129 0.000923777 22839 568
CCA TGG 0.00108052 0 3.33319e-06 5.8674e-05 0.00135142 0 4.99105e-06 3.62026e-05 0.996949 0.000257966 0.000124474 0.000133292 30772 1275
CCC GGG 0.00019131 0 3.45353e-06 6.12745e-06 0.000340648 0 3.72368e-06 4.27286e-06 0.99818 0.00050519 0.000427374 0.000337641 29910 939
CCG CGG 0.00154237 0 1.36615e-05 0.000308045 0.00131028 0 9.31661e-06 0.000290986 0.990868 0.00226977 0.00166229 0.00172482 13389 817
CCT AGG 0.000720656 0 3.39831e-06 3.69123e-05 0.000595168 0 4.33919e-06 1.31687e-05 0.997591 0.00020699 0.000463993 0.000364376 30447 1220
CGA TCG 0.000343913 2.33737e-05 0 0.000992222 3.94247e-05 1.48434e-05 0 0.00134487 0.991612 0.00250341 0.00172621 0.00140017 7197 345
CGC GCG 0.000808938 8.66734e-06 0 0.00354534 0.000191462 9.07109e-06 0 0.00108237 0.987635 0.00257568 0.00249605 0.00164701 11590 804
CGG CCG 0.000290986 9.31661e-06 0 0.00131028 0.000308045 1.36615e-05 0 0.00154237 0.990868 0.00226977 0.00166229 0.00172482 13389 817
CGT ACG 0.000924772 1.32567e-05 0 0.00225877 6.20922e-05 1.16334e-05 0 0.0012727 0.988617 0.00401798 0.00143045 0.00139164 8668 617
CTA TAG 3.38177e-05 0.000322906 8.66465e-06 0 7.95629e-06 0.000109462 8.58111e-06 0 0.998075 0.000136049 0.000813713 0.000484111 12595 356
CTC GAG 3.91753e-06 0.000187906 3.83671e-06 0 3.61279e-06 0.000226037 3.78136e-06 0 0.998547 7.99935e-05 0.000654918 0.000289433 27877 884
CTG CAG 3.76246e-06 0.000122728 2.954e-06 0 2.73078e-06 0.00010025 2.80347e-06 0 0.997816 0.000885418 0.000361004 0.000702513 38504 1242
CTT AAG 4.44689e-06 0.000166523 1.65438e-05 0 3.70039e-06 0.000185399 3.83646e-06 0 0.998547 0.000163322 0.000577625 0.000331143 27450 699
GAA TTC 0 3.87978e-06 5.85349e-05 3.71179e-06 0 3.85678e-06 4.21658e-05 3.71544e-06 0.99927 0.000146035 0.000353727 0.000114797 27000 573
GAC GTC 0 6.29044e-06 4.32965e-05 5.68429e-06 0 2.89525e-05 7.07694e-05 7.48274e-06 0.99853 6.25594e-05 0.000784555 0.000460272 17596 454
GAG CTC 0 3.78136e-06 0.000226037 3.61279e-06 0 3.83671e-06 0.000187906 3.91753e-06 0.998547 7.99935e-05 0.000654918 0.000289433 27877 884
GAT ATC 0 6.39435e-06 6.75433e-05 5.93698e-06 0 4.61267e-05 4.34067e-05 6.06443e-06 0.998461 8.13993e-05 0.000742848 0.000539735 16859 389
GCA TGC 0.00221693 0 4.82788e-06 7.65597e-05 0.00299899 0 3.8321e-06 0.000388037 0.993473 0.000135714 0.000546172 0.000155497 26359 1450
GCC GGC 0.00238432 0 4.36316e-06 0.000110359 0.00173261 0 4.10328e-06 0.000238217 0.994614 5.98911e-05 0.000594399 0.000257581 27563 1313
GCG CGC 0.00108237 0 9.07109e-06 0.000191462 0.00354534 0 8.66734e-06 0.000808938 0.987635 0.00257568 0.00249605 0.00164701 11590 804
GCT AGC 0.00180645 0 5.93729e-06 4.74755e-05 0.00215243 0 3.85578e-06 4.4088e-05 0.995061 4.58885e-05 0.000590432 0.00024283 26462 1270
GGA TCC 4.86628e-06 8.24968e-06 0 0.000366115 4.10844e-06 3.78469e-06 0 0.000262116 0.998458 0.000292674 0.000373284 0.000226852 26887 719
GGC GCC 0.000238217 4.10328e-06 0 0.00173261 0.000110359 4.36316e-06 0 0.00238432 0.994614 5.98911e-05 0.000594399 0.000257581 27563 1313
GGG CCC 4.27286e-06 3.72368e-06 0 0.000340648 6.12745e-06 3.45353e-06 0 0.00019131 0.99818 0.00050519 0.000427374 0.000337641 29910 939
GGT ACC 2.04279e-05 5.99206e-06 0 0.0012362 5.38736e-05 5.35233e-06 0 0.00066921 0.996407 0.000501763 0.000896287 0.000203481 20146 800
GTA TAC 8.62258e-06 5.54226e-05 1.63499e-05 0 7.40158e-06 4.283e-05 2.77605e-05 0 0.99811 0.000545191 0.000809912 0.000376574 13541 369
GTC GAC 7.48274e-06 7.07694e-05 2.89525e-05 0 5.68429e-06 4.32965e-05 6.29044e-06 0 0.99853 6.25594e-05 0.000784555 0.000460272 17596 454
GTG CAC 4.40954e-06 5.50473e-06 4.53265e-05 0 4.62166e-06 1.03894e-05 8.19293e-06 0 0.997233 0.000602193 0.0012727 0.000813475 25730 705
GTT AAC 5.35249e-06 0.00015286 5.50377e-06 0 5.34639e-06 0.000143816 5.71959e-06 0 0.999034 0.000106992 0.000268425 0.0002724 18720 383
TAA TTA 0 7.51061e-06 5.89898e-06 6.923e-06 0 7.06701e-06 5.51798e-06 5.87469e-06 0.998624 0.000189675 0.000847844 0.000299291 20377 404
TAC GTA 0 2.77605e-05 4.283e-05 7.40158e-06 0 1.63499e-05 5.54226e-05 8.62258e-06 0.99811 0.000545191 0.000809912 0.000376574 13541 369
TAG CTA 0 8.58111e-06 0.000109462 7.95629e-06 0 8.66465e-06 0.000322906 3.38177e-05 0.998075 0.000136049 0.000813713 0.000484111 12595 356
TAT ATA 0 0.000134189 6.25513e-05 5.6665e-06 0 6.20975e-06 2.13696e-05 5.67345e-06 0.998529 0.000750142 0.000255598 0.000229684 17701 418
TCA TGA 0.0015498 0 4.27477e-06 6.04723e-05 0.00143116 0 4.93155e-06 3.37508e-05 0.996082 8.13208e-05 0.000477193 0.000275468 25763 906
TCC GGA 0.000262116 0 3.78469e-06 4.10844e-06 0.000366115 0 8.24968e-06 4.86628e-06 0.998458 0.000292674 0.000373284 0.000226852 26887 719
TCG CGA 0.00134487 0 1.48434e-05 3.94247e-05 0.000992222 0 2.33737e-05 0.000343913 0.991612 0.00250341 0.00172621 0.00140017 7197 345
TCT AGA 0.000888406 0 3.46753e-06 5.62339e-06 0.000505012 0 4.18561e-06 2.54686e-05 0.997366 0.000126069 0.000701597 0.000374511 29448 915
TGA TCA 3.37508e-05 4.93155e-06 0 0.00143116 6.04723e-05 4.27477e-06 0 0.0015498 0.996082 8.13208e-05 0.000477193 0.000275468 25763 906
TGC GCA 0.000388037 3.8321e-06 0 0.00299899 7.65597e-05 4.82788e-06 0 0.00221693 0.993473 0.000135714 0.000546172 0.000155497 26359 1450
TGG CCA 3.62026e-05 4.99105e-06 0 0.00135142 5.8674e-05 3.33319e-06 0 0.00108052 0.996949 0.000257966 0.000124474 0.000133292 30772 1275
TGT ACA 2.25406e-05 1.4176e-05 0 0.00232448 7.0436e-06 3.90118e-06 0 0.00103239 0.995638 8.08302e-05 0.000760416 0.000116004 26716 1204
TTA TAA 5.87469e-06 5.51798e-06 7.06701e-06 0 6.923e-06 5.89898e-06 7.51061e-06 0 0.998624 0.000189675 0.000847844 0.000299291 20377 404
TTC GAA 3.71544e-06 4.21658e-05 3.85678e-06 0 3.71179e-06 5.85349e-05 3.87978e-06 0 0.99927 0.000146035 0.000353727 0.000114797 27000 573
TTG CAA 5.9829e-06 5.48697e-06 5.2973e-06 0 4.44421e-06 7.60537e-06 4.68662e-06 0 0.999093 0.000444363 0.000202463 0.000226308 22534 470
TTT AAA 2.89598e-06 4.54669e-05 1.24864e-05 0 2.50791e-06 4.61258e-06 2.72158e-06 0 0.999179 0.000139712 0.000533319 7.76853e-05 39903 693
66 rows