Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/75/5f2b92a25e828b4dc20e9dfb4515c9/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/FINAL_hotspot_list_07302025_hg38_sorted.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/75/5f2b92a25e828b4dc20e9dfb4515c9/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/50dd12f94eeb22331190484c74ad72/HCC1395_tumor.md.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/50dd12f94eeb22331190484c74ad72/HCC1395_tumor.md.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/foresight/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed
==> STAGING COMPLETE (8 inputs)

cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i HCC1395_tumor.md.bam --algo HsMetricAlgo --targets_list targets/FINAL_hotspot_list_07302025_hg38_sorted.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed HCC1395_tumor_FINAL_hotspot_list_07302025_hg38_sorted.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:147000001, elapsed 0.0s, est remaining 0.6s, peak mem 99MB, user 0.0s, sys 0.6s, output queue size 25
progress 10% @chr2:59000001, elapsed 0.1s, est remaining 0.5s, peak mem 99MB, user 0.1s, sys 1.4s, output queue size 14
progress 15% @chr2:238000001, elapsed 0.1s, est remaining 0.5s, peak mem 99MB, user 0.1s, sys 2.2s, output queue size 24
progress 20% @chr3:133000001, elapsed 0.1s, est remaining 0.5s, peak mem 99MB, user 0.2s, sys 3.0s, output queue size 20
progress 25% @chr4:116000001, elapsed 0.1s, est remaining 0.4s, peak mem 99MB, user 0.3s, sys 3.8s, output queue size 27
progress 30% @chr5:79000001, elapsed 0.2s, est remaining 0.4s, peak mem 99MB, user 0.3s, sys 4.5s, output queue size 7
progress 35% @chr6:56000001, elapsed 0.2s, est remaining 0.4s, peak mem 99MB, user 0.4s, sys 5.3s, output queue size 33
progress 40% @chr7:36000001, elapsed 0.2s, est remaining 0.3s, peak mem 99MB, user 0.4s, sys 6.1s, output queue size 19
progress 45% @chr8:52000001, elapsed 0.3s, est remaining 0.3s, peak mem 99MB, user 0.4s, sys 7.0s, output queue size 5
progress 50% @chr9:73000001, elapsed 0.3s, est remaining 0.3s, peak mem 99MB, user 0.5s, sys 7.7s, output queue size 8
progress 55% @chr10:97000001, elapsed 0.3s, est remaining 0.3s, peak mem 99MB, user 0.5s, sys 8.4s, output queue size 11
progress 60% @chr11:123000001, elapsed 0.3s, est remaining 0.2s, peak mem 99MB, user 0.6s, sys 9.3s, output queue size 7
progress 65% @chr13:17000001, elapsed 0.4s, est remaining 0.2s, peak mem 99MB, user 0.6s, sys 10.1s, output queue size 11
progress 70% @chr14:63000001, elapsed 0.4s, est remaining 0.2s, peak mem 99MB, user 0.7s, sys 10.8s, output queue size 2
progress 75% @chr16:13000001, elapsed 0.4s, est remaining 0.1s, peak mem 99MB, user 0.8s, sys 11.5s, output queue size 4
progress 80% @chr18:1000001, elapsed 0.4s, est remaining 0.1s, peak mem 99MB, user 0.8s, sys 12.4s, output queue size 8
progress 85% @chr20:20000001, elapsed 0.5s, est remaining 0.1s, peak mem 99MB, user 0.9s, sys 13.2s, output queue size 11
progress 90% @chrX:35000001, elapsed 0.5s, est remaining 0.1s, peak mem 124MB, user 1.3s, sys 13.7s, output queue size 114
progress 95% @chrY:33000001, elapsed 0.6s, est remaining 0.0s, peak mem 138MB, user 1.6s, sys 14.4s, output queue size 276
progress 100% @chr21:41000001, elapsed 0.9s, est remaining 0.0s, peak mem 165MB, user 2.5s, sys 15.4s, output queue size 3664
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 50811681
reads: 1001320
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1.150 user 8.016 sys 9.229 real
done: 1 calls 0.000 user 0.000 sys 0.001 real
exec_no_coor: 1 calls 0.000 user 0.000 sys 0.000 real
execute: 1 calls 0.004 user 0.001 sys 0.857 real
idle: 74 calls 0.009 user 0.031 sys 38.524 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 173301760 mem 2.769 user 16.076 sys 1.985 real