Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/2a66cdc907326a4cbec07e4e156438/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/altera_v3_targets_coding_postQC_hg38.bed
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/2a66cdc907326a4cbec07e4e156438/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/af/5fb0c047c9fb2f793cb896b96b92b4/Sig_18_Blood.md.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/af/5fb0c047c9fb2f793cb896b96b92b4/Sig_18_Blood.md.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/foresight/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed
==> STAGING COMPLETE (8 inputs)

cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Sig_18_Blood.md.bam --algo HsMetricAlgo --targets_list targets/altera_v3_targets_coding_postQC_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed Sig_18_Blood_altera_v3_targets_coding_postQC_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:161000001, elapsed 0.0s, est remaining 0.5s, peak mem 101MB, user 0.1s, sys 0.3s, output queue size 14
progress 10% @chr2:73000001, elapsed 0.0s, est remaining 0.4s, peak mem 101MB, user 0.2s, sys 0.8s, output queue size 16
progress 15% @chr2:234000001, elapsed 0.1s, est remaining 0.4s, peak mem 101MB, user 0.2s, sys 1.4s, output queue size 13
progress 20% @chr3:154000001, elapsed 0.1s, est remaining 0.4s, peak mem 101MB, user 0.3s, sys 2.1s, output queue size 13
progress 25% @chr4:115000001, elapsed 0.1s, est remaining 0.3s, peak mem 101MB, user 0.4s, sys 2.7s, output queue size 11
progress 30% @chr5:60000001, elapsed 0.1s, est remaining 0.3s, peak mem 101MB, user 0.4s, sys 3.3s, output queue size 26
progress 35% @chr6:66000001, elapsed 0.2s, est remaining 0.3s, peak mem 101MB, user 0.5s, sys 3.8s, output queue size 7
progress 40% @chr7:57000001, elapsed 0.2s, est remaining 0.3s, peak mem 101MB, user 0.6s, sys 4.3s, output queue size 21
progress 45% @chr8:58000001, elapsed 0.2s, est remaining 0.2s, peak mem 101MB, user 0.7s, sys 4.9s, output queue size 18
progress 50% @chr9:77000001, elapsed 0.2s, est remaining 0.2s, peak mem 101MB, user 0.7s, sys 5.6s, output queue size 18
progress 55% @chr10:95000001, elapsed 0.2s, est remaining 0.2s, peak mem 101MB, user 0.8s, sys 6.2s, output queue size 11
progress 60% @chr11:124000001, elapsed 0.3s, est remaining 0.2s, peak mem 101MB, user 0.8s, sys 6.8s, output queue size 13
progress 65% @chr13:16000001, elapsed 0.3s, est remaining 0.2s, peak mem 101MB, user 0.9s, sys 7.3s, output queue size 11
progress 70% @chr14:62000001, elapsed 0.3s, est remaining 0.1s, peak mem 101MB, user 1.0s, sys 7.8s, output queue size 9
progress 75% @chr16:14000001, elapsed 0.3s, est remaining 0.1s, peak mem 101MB, user 1.0s, sys 8.3s, output queue size 17
progress 80% @chr18:1000001, elapsed 0.3s, est remaining 0.1s, peak mem 101MB, user 1.1s, sys 9.0s, output queue size 6
progress 85% @chr20:22000001, elapsed 0.4s, est remaining 0.1s, peak mem 101MB, user 1.2s, sys 9.6s, output queue size 1
progress 90% @chrX:38000001, elapsed 0.4s, est remaining 0.0s, peak mem 127MB, user 1.5s, sys 10.0s, output queue size 114
progress 95% @chrY:35000001, elapsed 0.4s, est remaining 0.0s, peak mem 142MB, user 1.9s, sys 10.4s, output queue size 276
progress 100% @chr21:41000001, elapsed 0.7s, est remaining 0.0s, peak mem 163MB, user 2.9s, sys 11.2s, output queue size 3664
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 52291942
reads: 1001133
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1.015 user 5.672 sys 7.263 real
done: 1 calls 0.000 user 0.000 sys 0.001 real
exec_no_coor: 1 calls 0.000 user 0.000 sys 0.000 real
execute: 1 calls 0.003 user 0.001 sys 0.739 real
idle: 74 calls 0.006 user 0.015 sys 38.794 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 171307008 mem 3.139 user 11.830 sys 1.880 real