File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/52/d98bcb3a3008096c9a8bbaff7dc1cf/.command.err
Size
60.0 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_2;chr9_110971973-110972217.bed)
Attempt

Content

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[2026-05-27T11:33:26.747806Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T11:33:26.751956Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T11:33:26.751976Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T11:33:26.751981Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T11:33:26.751985Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXuK6GNY'
[2026-05-27T11:33:26.751989Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T11:33:26.751994Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T11:33:26.751999Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T11:33:26.752002Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T11:33:26.752006Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T11:33:26.752010Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T11:33:26.752013Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T11:33:26.752017Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T11:33:26.752021Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T11:33:26.752740Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T11:33:26.752873Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T11:33:26.758933Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T11:33:26.759690Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T11:33:26.760085Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T11:33:26.760268Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T11:33:26.760510Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T11:33:26.761154Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:26.761243Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:26.761314Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:26.761429Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:26.761494Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:26.761923Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:26.762277Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T11:33:26.762559Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:26.763270Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:26.763653Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:26.763914Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:26.765328Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:26.765987Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:26.766094Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T11:33:26.766374Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:26.766901Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-05-27T11:33:26.767148Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-05-27T11:33:26.767312Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-05-27T11:33:26.767386Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-05-27T11:33:26.767612Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-05-27T11:33:26.767682Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-05-27T11:33:26.767800Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-05-27T11:33:26.767871Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-05-27T11:33:26.767985Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-05-27T11:33:26.768048Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-05-27T11:33:26.769001Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-05-27T11:33:26.769202Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-05-27T11:33:26.769323Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:26.769390Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:26.769502Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:26.769595Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:26.769721Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:26.769789Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:26.769906Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:26.769973Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:26.770091Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:26.770648Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:26.771133Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:26.771200Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:26.771316Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-05-27T11:33:26.771383Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-05-27T11:33:26.771502Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-05-27T11:33:26.771566Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-05-27T11:33:26.771678Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-05-27T11:33:26.771739Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-05-27T11:33:26.771852Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-05-27T11:33:26.771969Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-05-27T11:33:26.772090Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-05-27T11:33:26.772187Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-05-27T11:33:26.772663Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-05-27T11:33:26.773103Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-05-27T11:33:26.773220Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-05-27T11:33:26.773286Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-05-27T11:33:26.773399Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-05-27T11:33:26.773463Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-05-27T11:33:26.773593Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:26.773661Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:26.773770Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:26.773835Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:26.773946Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:26.774011Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:26.774178Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:26.774427Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:26.789685Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:26.789810Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:26.789883Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T11:33:26.790037Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T11:33:26.790108Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T11:33:26.790192Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T11:33:26.790266Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T11:33:26.790376Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T11:33:26.790451Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T11:33:26.790499Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T11:33:26.791331Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:26.794295Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-05-27T11:33:26.794918Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-05-27T11:33:26.795439Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-05-27T11:33:26.796247Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-05-27T11:33:26.797075Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-05-27T11:33:26.798681Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:26.799508Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:26.800774Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:26.803806Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0009] Task initiated on local node
[2026-05-27T11:33:26.808930Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0012] Task initiated on local node
[2026-05-27T11:33:26.812991Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0011] Task initiated on local node
[2026-05-27T11:33:26.813609Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-05-27T11:33:26.815932Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-05-27T11:33:26.821105Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0001] Task initiated on local node
[2026-05-27T11:33:26.821331Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-05-27T11:33:26.821640Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0004] Task initiated on local node
[2026-05-27T11:33:26.919799Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:26.919901Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:26.920684Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-05-27T11:33:26.921211Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:26.924779Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-05-27T11:33:26.925923Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0005] Task initiated on local node
[2026-05-27T11:33:26.985924Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:26.986938Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:26.990351Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0000] Task initiated on local node
[2026-05-27T11:33:27.402824Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.403670Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.406598Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0005] Task initiated on local node
[2026-05-27T11:33:27.435844Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.435912Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.436612Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.436880Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.440558Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0006] Task initiated on local node
[2026-05-27T11:33:27.441329Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-05-27T11:33:27.501762Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.502638Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.505584Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0002] Task initiated on local node
[2026-05-27T11:33:27.767758Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.767840Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.768648Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.768912Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.771824Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0012] Task initiated on local node
[2026-05-27T11:33:27.772994Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0003] Task initiated on local node
[2026-05-27T11:33:27.801167Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.801996Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.805590Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0000] Task initiated on local node
[2026-05-27T11:33:27.810449Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.811176Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.814419Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-05-27T11:33:27.827499Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.828193Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.830953Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-05-27T11:33:27.892627Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.892730Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.892760Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.893550Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.893855Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.894426Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.897956Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0003] Task initiated on local node
[2026-05-27T11:33:27.899565Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-05-27T11:33:27.901016Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0008] Task initiated on local node
[2026-05-27T11:33:27.928813Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.928911Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.929635Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.929908Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.932834Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0013] Task initiated on local node
[2026-05-27T11:33:27.934166Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-05-27T11:33:27.994442Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.995239Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.998255Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0002] Task initiated on local node
[2026-05-27T11:33:28.059501Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.060319Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.063591Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0001] Task initiated on local node
[2026-05-27T11:33:28.225231Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.226067Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.228995Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0010] Task initiated on local node
[2026-05-27T11:33:28.441281Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.442103Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.445666Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-05-27T11:33:28.474442Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.474542Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.475234Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.475626Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.479493Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-05-27T11:33:28.540736Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.540861Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.541522Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.541908Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.545363Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0004] Task initiated on local node
[2026-05-27T11:33:28.545830Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0001] Task initiated on local node
[2026-05-27T11:33:28.546118Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.546528Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-05-27T11:33:28.547053Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.549429Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-05-27T11:33:28.578999Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.579691Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.583244Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0002] Task initiated on local node
[2026-05-27T11:33:28.584256Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.584907Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.587821Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0003] Task initiated on local node
[2026-05-27T11:33:28.600819Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.601491Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.604185Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-05-27T11:33:28.609375Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.610016Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.612770Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0004] Task initiated on local node
[2026-05-27T11:33:28.642063Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.642163Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.642774Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.643055Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.646424Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0000] Task initiated on local node
[2026-05-27T11:33:28.647315Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-05-27T11:33:28.707546Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.708229Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.710800Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.711474Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.711939Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0007] Task initiated on local node
[2026-05-27T11:33:28.714284Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-05-27T11:33:28.743620Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.744257Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.747049Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-05-27T11:33:28.776260Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.776935Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.780046Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0001] Task initiated on local node
[2026-05-27T11:33:28.793107Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.793789Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.796472Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0000] Task initiated on local node
[2026-05-27T11:33:28.809719Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.810336Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.813364Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-05-27T11:33:28.826240Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.826839Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.829444Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-05-27T11:33:28.859233Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.859864Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.862942Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-05-27T11:33:28.974338Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.975004Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.977944Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0004] Task initiated on local node
[2026-05-27T11:33:29.039231Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.039851Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.043032Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0008] Task initiated on local node
[2026-05-27T11:33:29.072308Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.072921Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.075926Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_008_chr9_0000] Task initiated on local node
[2026-05-27T11:33:29.137161Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.137835Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.140004Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.140647Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.140892Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-05-27T11:33:29.143416Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0011] Task initiated on local node
[2026-05-27T11:33:29.172810Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.173390Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.173940Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.175858Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.177332Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-05-27T11:33:29.178446Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0006] Task initiated on local node
[2026-05-27T11:33:29.208320Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.208427Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.208905Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.209545Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.213021Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0009] Task initiated on local node
[2026-05-27T11:33:29.213816Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0010] Task initiated on local node
[2026-05-27T11:33:29.243553Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.244252Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.408825Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.408903Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.409333Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.409686Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.412666Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0007] Task initiated on local node
[2026-05-27T11:33:29.413608Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0013] Task initiated on local node
[2026-05-27T11:33:29.475685Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.475792Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.540356Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.540863Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.543587Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0002] Task initiated on local node
[2026-05-27T11:33:29.605131Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.719586Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.720010Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.722876Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0003] Task initiated on local node
[2026-05-27T11:33:29.752143Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.518390Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.518891Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.521791Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-05-27T11:33:30.583326Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.600409Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.600908Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.603827Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-05-27T11:33:31.632818Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.633111Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.633269Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.633612Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.633913Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.637995Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T11:33:31.639355Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T11:33:31.640216Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T11:33:31.667656Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.667738Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.667761Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.668001Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.668249Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.670999Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T11:33:31.672267Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T11:33:31.700500Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.700587Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.700825Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.703366Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T11:33:31.732857Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.448492Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T11:33:37.325204Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T11:33:37.325204Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] 
[2026-05-27T11:33:37.325204Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T11:33:37.325255Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] 
[2026-05-27T11:33:37.325261Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T11:33:37.325267Z] [nf-52d98bcb3a3008096c9a8bbaff7dc1cf-6530b-kpx28] [579_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec