Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/34/ae719665261282fe8461c92139327a/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr19_15162349-15162662.bed.gz.tbi
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/d2bc159c1c7d65cb5bc7c5c1f3141f/Sig_18_tissue.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr19_15162349-15162662.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/d2bc159c1c7d65cb5bc7c5c1f3141f/Sig_18_tissue.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/34/ae719665261282fe8461c92139327a/.command.run
==> STAGING COMPLETE (10 inputs)

[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXjqWgqg/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXjqWgqg/chr19_15162349-15162662.bed.gz.tbi

Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXjqWgqg/chr19_15162349-15162662.bed.gz.tbi
[2026-05-27T11:33:25.812673Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T11:33:25.813603Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T11:33:25.813619Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T11:33:25.813623Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T11:33:25.813629Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXjqWgqg'
[2026-05-27T11:33:25.813635Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T11:33:25.813643Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T11:33:25.813652Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T11:33:25.813657Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T11:33:25.813663Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T11:33:25.813669Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T11:33:25.813674Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T11:33:25.813679Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T11:33:25.813685Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T11:33:25.814440Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T11:33:25.814548Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T11:33:25.820257Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T11:33:25.820805Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T11:33:25.820977Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T11:33:25.821377Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T11:33:25.821658Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T11:33:25.822066Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:25.822166Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:25.822237Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:25.822352Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:25.822417Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:25.822540Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:25.822601Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:25.822722Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:25.822962Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:25.823347Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:25.823445Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:25.823558Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T11:33:25.823814Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:25.823890Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:25.824210Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-05-27T11:33:25.824595Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-05-27T11:33:25.825225Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-05-27T11:33:25.826863Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-05-27T11:33:25.827637Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T11:33:25.827932Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-05-27T11:33:25.828178Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-05-27T11:33:25.828299Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-05-27T11:33:25.828366Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-05-27T11:33:25.828475Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-05-27T11:33:25.828537Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-05-27T11:33:25.828654Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-05-27T11:33:25.828721Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-05-27T11:33:25.828829Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-05-27T11:33:25.828895Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-05-27T11:33:25.829001Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-05-27T11:33:25.829067Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-05-27T11:33:25.829203Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-05-27T11:33:25.829394Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-05-27T11:33:25.829824Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-05-27T11:33:25.829892Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-05-27T11:33:25.830049Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-05-27T11:33:25.830114Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-05-27T11:33:25.830223Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-05-27T11:33:25.830284Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-05-27T11:33:25.830397Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-05-27T11:33:25.830461Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-05-27T11:33:25.830568Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-05-27T11:33:25.830632Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-05-27T11:33:25.831602Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-05-27T11:33:25.831957Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-05-27T11:33:25.832073Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:25.832137Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:25.832304Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:25.832371Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:25.832481Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:25.832543Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:25.832655Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:25.832716Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:25.832826Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:25.832886Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:25.833022Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:25.833208Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:25.833743Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:25.833811Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:25.833921Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:25.833982Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:25.834096Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:25.834159Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:25.834264Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:25.834330Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:25.850701Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:25.851111Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:25.851183Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T11:33:25.851341Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T11:33:25.851414Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T11:33:25.851501Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T11:33:25.851566Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T11:33:25.851673Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T11:33:25.851745Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T11:33:25.852857Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T11:33:25.855277Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:25.856285Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:25.856622Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:25.856866Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-05-27T11:33:25.857293Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-05-27T11:33:25.857788Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:25.858246Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-05-27T11:33:25.859287Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-05-27T11:33:25.860237Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:25.868104Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-05-27T11:33:25.871419Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-05-27T11:33:25.872864Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-05-27T11:33:25.873753Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-05-27T11:33:25.875287Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-05-27T11:33:25.877402Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-05-27T11:33:25.877672Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-05-27T11:33:25.878362Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-05-27T11:33:25.976078Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:25.976964Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-05-27T11:33:25.980233Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-05-27T11:33:26.342312Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:26.343138Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:26.345881Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-05-27T11:33:26.407311Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:26.408133Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-05-27T11:33:26.410964Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-05-27T11:33:27.274657Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.275455Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.278726Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-05-27T11:33:27.339858Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.340685Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.343560Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-05-27T11:33:27.372955Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.373056Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.373821Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.374099Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.377796Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-05-27T11:33:27.378691Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-05-27T11:33:27.439250Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.440026Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.442821Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-05-27T11:33:27.554351Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.555198Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.558386Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-05-27T11:33:27.619532Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.620393Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.623714Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-05-27T11:33:27.652548Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.653382Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.656149Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-05-27T11:33:27.656895Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.657539Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.660638Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-05-27T11:33:27.689823Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.690628Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.693462Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-05-27T11:33:27.754876Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.755637Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:27.758838Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-05-27T11:33:28.672390Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.673039Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.675883Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-05-27T11:33:28.705133Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.705963Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.709588Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-05-27T11:33:28.713906Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.714552Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.717174Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-05-27T11:33:28.730445Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.731146Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.733797Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-05-27T11:33:28.739297Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.739942Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.742405Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-05-27T11:33:28.747508Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.748084Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.750811Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-05-27T11:33:28.764046Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.764727Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.767913Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-05-27T11:33:28.772516Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.773111Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.775750Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-05-27T11:33:28.837403Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.838169Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.840864Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-05-27T11:33:28.870630Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.871355Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.874285Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-05-27T11:33:28.903517Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.904250Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.907145Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-05-27T11:33:29.069158Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.069941Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.073074Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-05-27T11:33:29.077864Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.078455Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.081342Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-05-27T11:33:29.110542Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.110622Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.111207Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.111475Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.114691Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-05-27T11:33:29.115954Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-05-27T11:33:29.176064Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.176159Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.176864Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.177182Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.180400Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-05-27T11:33:29.181434Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-05-27T11:33:29.209730Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.210428Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.213225Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-05-27T11:33:29.525398Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.526154Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.528943Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-05-27T11:33:29.590255Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.590343Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.590974Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.591313Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.594817Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-05-27T11:33:29.595431Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-05-27T11:33:29.623528Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.624202Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.627353Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-05-27T11:33:29.688376Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.689084Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.692026Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-05-27T11:33:29.753455Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.754201Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.757120Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-05-27T11:33:29.918713Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.919453Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.922609Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-05-27T11:33:29.983727Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.984453Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.987962Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-05-27T11:33:30.199180Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.199848Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.202738Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-05-27T11:33:30.264237Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.264901Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.267888Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-05-27T11:33:30.329250Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.329987Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.332976Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-05-27T11:33:30.394173Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.394850Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.398227Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-05-27T11:33:30.459027Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.459680Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.462504Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-05-27T11:33:30.523906Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.524506Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.527457Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-05-27T11:33:30.588683Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.589310Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.592320Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-05-27T11:33:30.653610Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.654248Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.657789Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-05-27T11:33:30.868978Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.869571Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.872414Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-05-27T11:33:30.933890Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.933994Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.934034Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.934544Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.934900Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.935067Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.938879Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-05-27T11:33:30.940145Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-05-27T11:33:30.969643Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.970119Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-05-27T11:33:30.971484Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.971538Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.085716Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.086230Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.088736Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-05-27T11:33:31.150274Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.264694Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.264800Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.265247Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.265782Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.268706Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-05-27T11:33:31.270104Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-05-27T11:33:31.330237Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.330316Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.845669Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.846147Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.848857Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-05-27T11:33:31.878164Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.594229Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.594724Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.597225Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-05-27T11:33:32.626829Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.627101Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.627262Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.627506Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.627922Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.631976Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T11:33:32.633257Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T11:33:32.633987Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T11:33:32.660533Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.660610Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.660633Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.660848Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.661176Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.663538Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T11:33:32.664548Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T11:33:32.693102Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.693184Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.693387Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.695777Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T11:33:32.725490Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.398747Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T11:33:44.702240Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T11:33:44.702240Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] 
[2026-05-27T11:33:44.702240Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T11:33:44.702300Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] 
[2026-05-27T11:33:44.702308Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T11:33:44.702314Z] [nf-34ae719665261282fe8461c92139327a-44292-ghh44] [595_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec