File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/54/1a116137a13d97b38b8edd8fc43737/.command.err
Size
86.1 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_1;chr4_22420786-22421189.bed)
Attempt

Content

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[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXjOrGyX/chr4_22420786-22421189.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXjOrGyX/chr4_22420786-22421189.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXjOrGyX/chr4_22420786-22421189.bed.gz.tbi
[2026-05-27T11:33:28.935309Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T11:33:28.936109Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T11:33:28.936144Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T11:33:28.936149Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T11:33:28.936155Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXjOrGyX'
[2026-05-27T11:33:28.936161Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T11:33:28.936167Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T11:33:28.936173Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T11:33:28.936177Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T11:33:28.936183Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T11:33:28.936200Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T11:33:28.936204Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T11:33:28.936209Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T11:33:28.936214Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T11:33:28.936820Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T11:33:28.936895Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T11:33:28.942877Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T11:33:28.943648Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T11:33:28.943844Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T11:33:28.944047Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T11:33:28.944305Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.944783Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.944873Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.944944Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.945058Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.945123Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.945237Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.945297Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.945559Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.945821Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.945992Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.946864Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.947102Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.949159Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.949482Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.949672Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T11:33:28.949839Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.949920Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.950038Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.950103Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.950299Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.950373Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.950707Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.950906Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.951024Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.951090Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.951211Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.951276Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.951395Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.951463Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.951577Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.951646Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.951777Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.951839Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.952076Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.952410Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.952549Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.952645Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.952767Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.952835Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.952946Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.953007Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.953118Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.953185Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.953294Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.953358Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.953624Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.954035Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.954209Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.954275Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.954382Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.954445Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.954558Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.954619Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.954727Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.954788Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.954897Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.954960Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.955066Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.955165Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.955385Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.955880Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.955994Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.956058Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.956164Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.956252Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.956372Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.956434Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.956544Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.956613Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.956720Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.956786Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.956901Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.957111Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.959298Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.959850Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.959984Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.960055Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.960169Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.960265Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.960380Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.960446Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.960560Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.960622Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.960731Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.960836Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.961108Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.961884Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.962069Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.962145Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.962272Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.962345Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.962459Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.962523Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.962644Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.962713Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.979619Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.980342Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.980503Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.980732Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.981760Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.981952Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.982321Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.982481Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.983076Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.983298Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.983692Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.984280Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.985223Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.985831Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.986288Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.987063Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T11:33:28.987900Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.988107Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T11:33:28.990858Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-05-27T11:33:28.991510Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0002] Task initiated on local node
[2026-05-27T11:33:29.000448Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0008] Task initiated on local node
[2026-05-27T11:33:29.005748Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0013] Task initiated on local node
[2026-05-27T11:33:29.006080Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0003] Task initiated on local node
[2026-05-27T11:33:29.011896Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0001] Task initiated on local node
[2026-05-27T11:33:29.969212Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0000] Task initiated on local node
[2026-05-27T11:33:29.976256Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.977425Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-05-27T11:33:29.980821Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0014] Task initiated on local node
[2026-05-27T11:33:30.174932Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0011] Task initiated on local node
[2026-05-27T11:33:30.175238Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0014] Task initiated on local node
[2026-05-27T11:33:30.192427Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.192514Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.192536Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.192557Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.193649Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.193948Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.194285Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.194929Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.198512Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0008] Task initiated on local node
[2026-05-27T11:33:30.201314Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0006] Task initiated on local node
[2026-05-27T11:33:30.203795Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0012] Task initiated on local node
[2026-05-27T11:33:30.260612Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.261794Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.265289Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0007] Task initiated on local node
[2026-05-27T11:33:30.526893Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.527027Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.528269Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.528635Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.532004Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0005] Task initiated on local node
[2026-05-27T11:33:30.532921Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0015] Task initiated on local node
[2026-05-27T11:33:30.894504Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.895628Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-05-27T11:33:30.898904Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0009] Task initiated on local node
[2026-05-27T11:33:31.110622Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.111758Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.114798Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0004] Task initiated on local node
[2026-05-27T11:33:31.276546Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.277796Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.281098Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0010] Task initiated on local node
[2026-05-27T11:33:31.643308Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.644571Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.647931Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0001] Task initiated on local node
[2026-05-27T11:33:31.709080Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.710320Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.713604Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0005] Task initiated on local node
[2026-05-27T11:33:31.925193Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.926174Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.929233Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0005] Task initiated on local node
[2026-05-27T11:33:31.990399Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.991556Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-05-27T11:33:31.994625Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0014] Task initiated on local node
[2026-05-27T11:33:32.055736Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.056883Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.059912Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0002] Task initiated on local node
[2026-05-27T11:33:32.113509Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0013] Task initiated on local node
[2026-05-27T11:33:32.121245Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.121331Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.122417Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.122699Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.126376Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0002] Task initiated on local node
[2026-05-27T11:33:32.126859Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0012] Task initiated on local node
[2026-05-27T11:33:32.187317Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.188440Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.191437Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0014] Task initiated on local node
[2026-05-27T11:33:32.252742Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.254236Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.257928Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0014] Task initiated on local node
[2026-05-27T11:33:32.318514Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.319602Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.322515Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0007] Task initiated on local node
[2026-05-27T11:33:32.323316Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.324321Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.327052Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0012] Task initiated on local node
[2026-05-27T11:33:32.388598Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.388702Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.389745Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.390086Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.393852Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0013] Task initiated on local node
[2026-05-27T11:33:32.394168Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0010] Task initiated on local node
[2026-05-27T11:33:32.455126Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.456235Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.459509Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0003] Task initiated on local node
[2026-05-27T11:33:32.571109Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.572258Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.575167Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0008] Task initiated on local node
[2026-05-27T11:33:32.687184Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.688293Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.691819Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0010] Task initiated on local node
[2026-05-27T11:33:32.753078Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.753184Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.754202Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.754547Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.757864Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0011] Task initiated on local node
[2026-05-27T11:33:32.759080Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0012] Task initiated on local node
[2026-05-27T11:33:32.819058Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.819182Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.819218Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.820154Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.820483Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.820857Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.824259Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0004] Task initiated on local node
[2026-05-27T11:33:32.825802Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0005] Task initiated on local node
[2026-05-27T11:33:32.826608Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0006] Task initiated on local node
[2026-05-27T11:33:32.885927Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.886037Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.887205Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.887546Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.891012Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0011] Task initiated on local node
[2026-05-27T11:33:32.892029Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0007] Task initiated on local node
[2026-05-27T11:33:33.704471Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.705406Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.707886Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0010] Task initiated on local node
[2026-05-27T11:33:33.769521Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.770519Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.773444Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0009] Task initiated on local node
[2026-05-27T11:33:34.035178Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.036064Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.039081Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0013] Task initiated on local node
[2026-05-27T11:33:34.039701Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.040366Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.042849Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0002] Task initiated on local node
[2026-05-27T11:33:34.072420Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.073342Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.075994Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0007] Task initiated on local node
[2026-05-27T11:33:34.137659Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.138595Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.142006Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0015] Task initiated on local node
[2026-05-27T11:33:34.171089Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.171999Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.174858Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0006] Task initiated on local node
[2026-05-27T11:33:34.175840Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.176607Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.179489Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0006] Task initiated on local node
[2026-05-27T11:33:34.240991Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.241109Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.241969Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.242279Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.245500Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0000] Task initiated on local node
[2026-05-27T11:33:34.246798Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0014] Task initiated on local node
[2026-05-27T11:33:34.276246Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.277116Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.279459Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.280337Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.280694Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0005] Task initiated on local node
[2026-05-27T11:33:34.282993Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0009] Task initiated on local node
[2026-05-27T11:33:34.312609Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.313497Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.316786Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0013] Task initiated on local node
[2026-05-27T11:33:34.377664Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.378558Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.381570Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0011] Task initiated on local node
[2026-05-27T11:33:34.593693Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.593797Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.594557Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.595169Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.598649Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0006] Task initiated on local node
[2026-05-27T11:33:34.599868Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0004] Task initiated on local node
[2026-05-27T11:33:34.661443Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.662190Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.665130Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0001] Task initiated on local node
[2026-05-27T11:33:34.776670Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.777457Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.780307Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0007] Task initiated on local node
[2026-05-27T11:33:34.892007Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.892151Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.892952Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.893259Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.896494Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0003] Task initiated on local node
[2026-05-27T11:33:34.897327Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0015] Task initiated on local node
[2026-05-27T11:33:34.957977Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.958795Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.962026Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0000] Task initiated on local node
[2026-05-27T11:33:35.073774Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.074557Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.077284Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0003] Task initiated on local node
[2026-05-27T11:33:35.138847Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.139602Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.142302Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0009] Task initiated on local node
[2026-05-27T11:33:35.203820Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.204638Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.207797Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0005] Task initiated on local node
[2026-05-27T11:33:35.268778Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.269583Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.272808Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0000] Task initiated on local node
[2026-05-27T11:33:35.333897Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.334643Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.337687Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0001] Task initiated on local node
[2026-05-27T11:33:35.338412Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.338954Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.341473Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0004] Task initiated on local node
[2026-05-27T11:33:35.342405Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.342911Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.345493Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0001] Task initiated on local node
[2026-05-27T11:33:35.374963Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.375044Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.375625Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.375867Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.378801Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0002] Task initiated on local node
[2026-05-27T11:33:35.379829Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0004] Task initiated on local node
[2026-05-27T11:33:35.408212Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.408935Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.412802Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0010] Task initiated on local node
[2026-05-27T11:33:35.523420Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.524215Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.526806Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0012] Task initiated on local node
[2026-05-27T11:33:35.556538Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.557234Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.560020Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0001] Task initiated on local node
[2026-05-27T11:33:35.589156Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.589838Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.592446Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0013] Task initiated on local node
[2026-05-27T11:33:35.621815Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.622500Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.625509Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0011] Task initiated on local node
[2026-05-27T11:33:35.654561Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.655248Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.658228Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0008] Task initiated on local node
[2026-05-27T11:33:35.687293Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.687975Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.690856Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0015] Task initiated on local node
[2026-05-27T11:33:35.752393Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.753078Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.756024Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0009] Task initiated on local node
[2026-05-27T11:33:36.068466Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.068567Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.069149Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.069517Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.072464Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0007] Task initiated on local node
[2026-05-27T11:33:36.073456Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0011] Task initiated on local node
[2026-05-27T11:33:36.103074Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.103240Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.103277Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.103886Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.104151Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.104359Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.106871Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_003_chr4_0000] Task initiated on local node
[2026-05-27T11:33:36.108998Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0002] Task initiated on local node
[2026-05-27T11:33:36.110968Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0000] Task initiated on local node
[2026-05-27T11:33:36.140536Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.140615Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.141170Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.141497Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.145044Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0008] Task initiated on local node
[2026-05-27T11:33:36.145681Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0012] Task initiated on local node
[2026-05-27T11:33:36.149746Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.150277Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.152571Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0000] Task initiated on local node
[2026-05-27T11:33:36.182259Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.182335Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.182932Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.185524Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0003] Task initiated on local node
[2026-05-27T11:33:36.186629Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.218654Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.219172Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.221679Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0006] Task initiated on local node
[2026-05-27T11:33:36.251647Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.366193Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.366273Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.366732Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.367197Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.370405Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0008] Task initiated on local node
[2026-05-27T11:33:36.398346Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0010] Task initiated on local node
[2026-05-27T11:33:36.400424Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.400494Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.514640Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.515094Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.517987Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0004] Task initiated on local node
[2026-05-27T11:33:36.547067Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.661242Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.661691Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.664034Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0009] Task initiated on local node
[2026-05-27T11:33:36.693610Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.308983Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.309422Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.311662Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0003] Task initiated on local node
[2026-05-27T11:33:37.341259Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.341535Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.341664Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.341944Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.342421Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.346075Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T11:33:37.347290Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T11:33:37.347974Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T11:33:37.375430Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.375491Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.375513Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.375709Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.376265Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.378474Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T11:33:37.379402Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T11:33:37.408571Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.408638Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.408816Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.411070Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T11:33:37.440782Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:39.559510Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T11:33:47.824766Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T11:33:47.824766Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] 
[2026-05-27T11:33:47.824766Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T11:33:47.824821Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] 
[2026-05-27T11:33:47.824828Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T11:33:47.824834Z] [nf-541a116137a13d97b38b8edd8fc43737-235ed-rb28c] [607_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec