cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Sig_18_Blood.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz Sig_18_Blood.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:119893964, elapsed 0.0s, est remaining 0.8s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 3099
progress 10% @chr2:17780621, elapsed 0.1s, est remaining 0.7s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 13145
progress 15% @chr2:189051320, elapsed 0.1s, est remaining 0.6s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 9291
progress 20% @chr3:97967162, elapsed 0.1s, est remaining 0.6s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 19782
progress 25% @chr4:88457270, elapsed 0.2s, est remaining 0.6s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 30022
progress 30% @chr5:147279247, elapsed 0.2s, est remaining 0.5s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 40064
progress 35% @chr6:127119291, elapsed 0.3s, est remaining 0.5s, peak mem 166MB, user 0.0s, sys 0.0s, output queue size 5128
progress 40% @chr7:128817758, elapsed 0.3s, est remaining 0.5s, peak mem 166MB, user 0.0s, sys 0.0s, output queue size 14621
progress 45% @chr9:893912, elapsed 0.4s, est remaining 0.4s, peak mem 283MB, user 0.0s, sys 0.0s, output queue size 23971
progress 50% @chr10:32491922, elapsed 0.4s, est remaining 0.4s, peak mem 292MB, user 0.0s, sys 0.0s, output queue size 33919
progress 55% @chr11:48153796, elapsed 0.4s, est remaining 0.4s, peak mem 301MB, user 0.0s, sys 0.0s, output queue size 44388
progress 60% @chr12:22055149, elapsed 0.5s, est remaining 0.3s, peak mem 301MB, user 0.0s, sys 0.0s, output queue size 53936
progress 65% @chr13:49207081, elapsed 0.5s, est remaining 0.3s, peak mem 301MB, user 0.0s, sys 0.0s, output queue size 64989
progress 70% @chr15:42684116, elapsed 0.6s, est remaining 0.2s, peak mem 301MB, user 0.0s, sys 0.0s, output queue size 75019
progress 75% @chr16:30965601, elapsed 0.6s, est remaining 0.2s, peak mem 304MB, user 0.0s, sys 0.0s, output queue size 8505
progress 80% @chr17:42500707, elapsed 0.7s, est remaining 0.2s, peak mem 304MB, user 0.0s, sys 0.0s, output queue size 19188
progress 85% @chr19:5684781, elapsed 0.7s, est remaining 0.1s, peak mem 331MB, user 0.0s, sys 0.0s, output queue size 29599
progress 90% @chr19:55731999, elapsed 0.7s, est remaining 0.1s, peak mem 331MB, user 0.0s, sys 0.0s, output queue size 39095
progress 95% @chr22:37059313, elapsed 1.1s, est remaining 0.1s, peak mem 2520MB, user 5.9s, sys 2.1s, output queue size 3246
progress 100% @chrY:24857276, elapsed 1.1s, est remaining 0.0s, peak mem 2520MB, user 6.1s, sys 2.1s, output queue size 7558
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
input file size: 52291942
reads: 1001133
contig: 201779 intervals 37922265 bases
advance: 208647 calls 1.610 user 0.076 sys 2.056 real
done: 1 calls 0.296 user 0.079 sys 0.382 real
execute: 1 calls 0.011 user 0.001 sys 1.140 real
fetch_reads: 208647 calls 0.062 user 0.000 sys 0.148 real
fetch_ref: 2072 calls 0.011 user 0.007 sys 0.021 real
fetch_vcf: 2072 calls 0.886 user 0.021 sys 0.922 real
idle: 91 calls 0.003 user 0.001 sys 31.559 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 2257 calls 4.151 user 1.965 sys 6.622 real
overall: 2642653184 mem 10.076 user 9.511 sys 2.511 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory