Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/62/bca6c19d9d53a49873689fc986fbd5/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/62/bca6c19d9d53a49873689fc986fbd5/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/913060702caf09fcfc1e4e7b484246/Sig_18_Blood.recalibrated.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr1_68991-70108.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/913060702caf09fcfc1e4e7b484246/Sig_18_Blood.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr1_68991-70108.bed.gz.tbi
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-05-27T11:33:32.258336Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T11:33:32.261819Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T11:33:32.261846Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T11:33:32.261851Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T11:33:32.261856Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXvde2f6'
[2026-05-27T11:33:32.261860Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T11:33:32.261868Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T11:33:32.261872Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T11:33:32.261876Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T11:33:32.261880Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T11:33:32.261883Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T11:33:32.261887Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T11:33:32.261891Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T11:33:32.261895Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T11:33:32.262392Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T11:33:32.262498Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T11:33:32.269491Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T11:33:32.270246Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T11:33:32.270432Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T11:33:32.270593Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T11:33:32.270942Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.271257Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.271431Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.271506Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.271648Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.271719Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.271840Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.271902Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.272029Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.272349Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.272707Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.272849Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.273088Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.274019Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.274412Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.274631Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.274833Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.277214Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.277586Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T11:33:32.277670Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.278273Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.278511Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.278898Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.279242Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.279679Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.279954Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.280108Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.280193Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.280310Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.280378Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.280493Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.280594Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.280741Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.280804Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.280932Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.281021Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.281316Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.281660Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.281779Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.281848Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.281963Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.282025Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.282138Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.282203Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.282738Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.282943Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.283420Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.283548Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.283672Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.283742Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.283864Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.283932Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.284054Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.284129Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.284265Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.284336Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.284701Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.285152Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.285594Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.285669Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.285788Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.285858Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.285974Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.286038Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.286149Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.286385Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.286993Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.287066Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.303863Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.304024Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.304108Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.304309Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.304379Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.304470Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.306484Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.306948Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.307613Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T11:33:32.307680Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T11:33:32.313091Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.313716Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.313961Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.314418Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.315138Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.315791Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.316454Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.317465Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.318864Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.323392Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0003] Task initiated on local node
[2026-05-27T11:33:32.326801Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0004] Task initiated on local node
[2026-05-27T11:33:32.329344Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0014] Task initiated on local node
[2026-05-27T11:33:32.332938Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0008] Task initiated on local node
[2026-05-27T11:33:32.335355Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-05-27T11:33:32.336983Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0000] Task initiated on local node
[2026-05-27T11:33:32.339061Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0016] Task initiated on local node
[2026-05-27T11:33:32.340303Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0006] Task initiated on local node
[2026-05-27T11:33:32.440178Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.441356Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:32.445141Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-05-27T11:33:33.358458Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.359523Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.363050Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0019] Task initiated on local node
[2026-05-27T11:33:33.624707Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.626044Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.629141Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0012] Task initiated on local node
[2026-05-27T11:33:33.690551Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.692183Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:33.696074Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0001] Task initiated on local node
[2026-05-27T11:33:34.107767Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.109134Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.112798Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-05-27T11:33:34.525082Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.527011Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.530268Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0004] Task initiated on local node
[2026-05-27T11:33:34.591613Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.592673Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.596056Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-05-27T11:33:34.958011Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.958107Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.959584Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.960189Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:34.963771Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0014] Task initiated on local node
[2026-05-27T11:33:35.001841Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_000_chr1_0000] Task initiated on local node
[2026-05-27T11:33:35.024957Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.026018Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.029662Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0011] Task initiated on local node
[2026-05-27T11:33:35.030444Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.031420Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.034229Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-05-27T11:33:35.095554Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.095658Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.096693Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.097064Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.101025Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0011] Task initiated on local node
[2026-05-27T11:33:35.101756Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0017] Task initiated on local node
[2026-05-27T11:33:35.161901Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.163062Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.166207Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-05-27T11:33:35.195376Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.196475Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.199435Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-05-27T11:33:35.200340Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.201447Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.204399Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0020] Task initiated on local node
[2026-05-27T11:33:35.233669Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.234731Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.238050Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-05-27T11:33:35.650216Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.651537Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.655121Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-05-27T11:33:35.766279Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.766374Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.767155Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.767578Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.771028Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-05-27T11:33:35.772297Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0000] Task initiated on local node
[2026-05-27T11:33:35.833874Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.834939Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.838259Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0008] Task initiated on local node
[2026-05-27T11:33:35.843135Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.844009Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.847508Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-05-27T11:33:35.876714Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.877667Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.881024Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0005] Task initiated on local node
[2026-05-27T11:33:35.910443Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.911345Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.914533Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-05-27T11:33:35.975632Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.976669Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-05-27T11:33:35.980355Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-05-27T11:33:36.041407Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.042852Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.046755Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-05-27T11:33:36.059585Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.060691Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.064087Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0010] Task initiated on local node
[2026-05-27T11:33:36.077194Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.078261Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.083607Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-05-27T11:33:36.643977Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.645446Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.648499Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0001] Task initiated on local node
[2026-05-27T11:33:36.649177Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.650004Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.653030Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0007] Task initiated on local node
[2026-05-27T11:33:36.714472Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.715862Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.719204Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-05-27T11:33:36.780567Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.781539Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.784539Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0016] Task initiated on local node
[2026-05-27T11:33:36.845913Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.846921Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.850675Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-05-27T11:33:36.911460Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.912459Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-05-27T11:33:36.916150Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0015] Task initiated on local node
[2026-05-27T11:33:37.278328Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.279056Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.282860Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-05-27T11:33:37.343798Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.344662Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.347920Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-05-27T11:33:37.509803Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.510528Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.513720Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0020] Task initiated on local node
[2026-05-27T11:33:37.542732Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.543767Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.544005Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.546256Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.548283Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0003] Task initiated on local node
[2026-05-27T11:33:37.549388Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0006] Task initiated on local node
[2026-05-27T11:33:37.578638Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.579299Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.581705Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.582432Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.582805Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0013] Task initiated on local node
[2026-05-27T11:33:37.585434Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-05-27T11:33:37.647275Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.647941Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.651098Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-05-27T11:33:37.712515Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.713232Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.716231Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0019] Task initiated on local node
[2026-05-27T11:33:37.777782Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.778526Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.781674Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0002] Task initiated on local node
[2026-05-27T11:33:37.893119Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.893968Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-05-27T11:33:37.897586Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0009] Task initiated on local node
[2026-05-27T11:33:38.210042Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.210710Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.213424Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0012] Task initiated on local node
[2026-05-27T11:33:38.274980Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.275665Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.279106Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0017] Task initiated on local node
[2026-05-27T11:33:38.340089Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.340784Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.341209Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.343203Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.344034Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0010] Task initiated on local node
[2026-05-27T11:33:38.346524Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-05-27T11:33:38.407663Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.407772Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.408460Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.409006Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.412193Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0005] Task initiated on local node
[2026-05-27T11:33:38.413173Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-05-27T11:33:38.473601Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.473676Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.474170Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.477585Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0018] Task initiated on local node
[2026-05-27T11:33:38.839737Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.840329Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.843807Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0007] Task initiated on local node
[2026-05-27T11:33:38.904856Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.969331Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.969840Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-05-27T11:33:38.972547Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0015] Task initiated on local node
[2026-05-27T11:33:39.033891Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:39.549216Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:39.549778Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-05-27T11:33:39.552719Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-05-27T11:33:39.582028Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:39.997002Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:39.997501Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.000201Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0013] Task initiated on local node
[2026-05-27T11:33:40.029914Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.062157Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.062582Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.065083Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0018] Task initiated on local node
[2026-05-27T11:33:40.070185Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.070585Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.073117Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0009] Task initiated on local node
[2026-05-27T11:33:40.102794Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.102863Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.267218Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.267647Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.270181Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0002] Task initiated on local node
[2026-05-27T11:33:40.299478Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.299742Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.299879Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.300162Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.300608Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.305058Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T11:33:40.305350Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T11:33:40.330581Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T11:33:40.333638Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.333698Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.333720Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.333910Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.334154Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.336804Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T11:33:40.337746Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T11:33:40.366384Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.366457Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.366642Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T11:33:40.369201Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T11:33:40.398796Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T11:33:42.868296Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T11:33:51.150644Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T11:33:51.150644Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] 
[2026-05-27T11:33:51.150644Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T11:33:51.150716Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] 
[2026-05-27T11:33:51.150724Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T11:33:51.150732Z] [nf-62bca6c19d9d53a49873689fc986fbd5-6d0bf-hvfks] [640_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec