Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/d87753f97c3f3eb1df8c1b837d7772/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/d87753f97c3f3eb1df8c1b837d7772/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4b/b66aba058a3c62f6e70309bde2f9ef/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/d87753f97c3f3eb1df8c1b837d7772/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4b/dafca06eec84c0f1396786c86b7e20/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4b/dafca06eec84c0f1396786c86b7e20/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-72wjz3yr because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-05-27 11:38:15,855 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-05-27 11:38:16,662 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-05-27 11:38:16,836 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-05-27 11:38:17,796 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-05-27 11:38:17,981 - cnv_pipe.batch.run_model - INFO - Processing cluster 1003 with 198 probes
2026-05-27 11:38:18,358 - cnv_pipe.batch.run_model.cluster1003 - INFO - Child process started for cluster 1003 with 198 probes
2026-05-27 11:39:15,263 - cnv_pipe.batch.run_model.cluster1003 - INFO - Child process finished cluster 1003. Wrote cluster_1003_samples.csv and cluster_1003_params.csv
2026-05-27 11:39:15,265 - cnv_pipe.batch.run_model - INFO - Cluster 1003 finished in 57.28 seconds. Status: SUCCESS